Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3722 ATGCATGCCTTGCCTGAAAGCCTTTCTTATGTATGCTTCAGGCTTCAAGGGAAGCAACCCAACGTGCATCACGTGAACGCAACATCAAGGAAGAGTCAATGGTTTGAATGTCATGGTGATGCTGGTGGGAAGGGGAGTGAAAGTGATTGGTGTGCAGTGTGTCTATGCCAAGTGTCAAAGGGAGAACGGGTACGGTCGCTGCCTGGATGCAAGCACCGTTTTCATGGGGATTGCATTGACGCGTGGTTGAAGGACCACAACACCTGCCCTCTTTGTAGGAACCAGGTCGCTGACCATCCCTCCTCCCGCTCTCATAAACAGGGCAAAATAATGTTGAGGCAGTGCTCTTTCATTCATATATTTCAGAGCTTCTCTGATGTGTTGATAGCCCTTCTATACATGACACTTCCAGCTAGCATCCGCGACAGTTTCCCCTTGGTTCATTGA 447 0.4922 MHALPESLSYVCFRLQGKQPNVHHVNATSRKSQWFECHGDAGGKGSESDWCAVCLCQVSKGERVRSLPGCKHRFHGDCIDAWLKDHNTCPLCRNQVADHPSSRSHKQGKIMLRQCSFIHIFQSFSDVLIALLYMTLPASIRDSFPLVH* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3722 148 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 111 IPR013083 -
Dod01g3722 148 Pfam Ring finger domain 50 93 IPR001841 -
Dod01g3722 148 SUPERFAMILY RING/U-box 47 100 - -
Dod01g3722 148 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 37 106 IPR044675 -
Dod01g3722 148 SMART ring_2 51 92 IPR001841 -
Dod01g3722 148 PANTHER RING-H2 FINGER PROTEIN ATL2 37 106 - -
Dod01g3722 148 ProSiteProfiles Zinc finger RING-type profile. 51 93 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3722 Dod-Chr1 78893884 78895232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3722 51 121 C3H Transcription Factor Family AT2G34990 42.254 3.01e-15 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3722 - - vun:114167536 138.272