Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3712 ATGATGGCGATGGCGATGGCGAGCAGCAACAGCAACGTTGGACAGTTCGGGGACACAACACTGACCAAAGTGTTTGTGGGAGGGCTTGCGTGGGAGACTCCGACAGAGGCGCTGAGAGAGCACTTTGAGAAGTTCGGTGAGATCCTTGAGGCCGTCATCATTTCTGATAAGTTCACCGGCAGATCCAAAGGCTACGGCTTTGTAACGTTCAAGGAGGAAGAGGCAGCGAAGAAGGCATGTGAGGAGCCAAGTGTGATAATCAATGGGCGACGAGCAAACTGCAATCTGGCATCCCTGGGTGCACGCCGTCCAAGGTCTTCTAATTCCACCACTTCTCCTAGTCCTACTCCTGCTCCCCCACAGCCAAAAGGATCAAACGGTGGAGCACTGAGAACCGGCAGTCATCAGGTGCAGCGATATTATCCGGCGACACCTGCTCCCGCTCCTCCCCCATTTCACCATCGCCCGCCTCCTTTCTACGGGTACACGCCCACCTACATTGCATCGGACATAAATTACAATTATAATTATAATTACAATCAGAAGCTGATCTATGGCAGTGGTGGGGCCTGCATGAACGGGTACATGGCCCCTGTGTACCAGAGCGCTGCTATTGTGAATGCGAATACGTTGATGCCAATGTACCCTGTCTACCACTTCCATCGATCCGAGACAATGGGTGTACCTGCTGCACACATCTTCCACCCAACCCTACCGGCCCACTTTACCACAGTGCCCTCATCCATTACTCCTAATACAGGTGCGCCACATCCAAATGTCTTTCTTTGCATTTCACCACATGACCTTGCCATGTGA 816 0.5245 MMAMAMASSNSNVGQFGDTTLTKVFVGGLAWETPTEALREHFEKFGEILEAVIISDKFTGRSKGYGFVTFKEEEAAKKACEEPSVIINGRRANCNLASLGARRPRSSNSTTSPSPTPAPPQPKGSNGGALRTGSHQVQRYYPATPAPAPPPFHHRPPPFYGYTPTYIASDINYNYNYNYNQKLIYGSGGACMNGYMAPVYQSAAIVNANTLMPMYPVYHFHRSETMGVPAAHIFHPTLPAHFTTVPSSITPNTGAPHPNVFLCISPHDLAM* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3712 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 22 111 IPR000504 GO:0003723
Dod01g3712 271 SMART rrm1_1 23 95 IPR000504 GO:0003723
Dod01g3712 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 89 IPR000504 GO:0003723
Dod01g3712 271 PANTHER GEO13361P1-RELATED 6 260 - -
Dod01g3712 271 SUPERFAMILY RNA-binding domain, RBD 16 120 IPR035979 GO:0003676
Dod01g3712 271 MobiDBLite consensus disorder prediction 98 132 - -
Dod01g3712 271 CDD RRM_RBM24_RBM38_like 22 97 - -
Dod01g3712 271 Gene3D - 5 112 IPR012677 -
Dod01g3712 271 PANTHER RNA-BINDING PROTEIN ARP1-RELATED 6 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3712 Dod-Chr1 78798630 78800346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3712 18 98 C2H2 Transcription Factor Family AT2G19380 44.444 2.10e-16 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3712 - - lang:109337745 271.166