Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3704 ATGGAAGAAGTGAAAGGGTATTCTGATGGCAGAGAAGAGGAGGAGGATGAGGAAGCAGCTGGGATCATCGCAATCACAACAAGAGAAGAAGAAGAAGAAACCAACAATAGGTTACATCAGCAAGATGCAGCTCCCAGTTTCATCAATCATCACCGAAAGCAGCAGCAGCAGCTAGACTTCATGGACTTGTCACTCGGAAGCAACAAGGACGACGGGCCGAATTTCCAACAAGGATCTAGCAGCAGCACTCAGCAGCACCAATATTCCCATGGCCACGCCGGTTCTTCTTCAACCAGCAACAACGAAGCACCCGTAGAGAAAGAGCACATGTTCGACAAAGTGGTGACGCCGAGTGACGTAGGGAAGCTGAACCGTCTGGTGATACCGAAGCAGCACGCGGAGAAGTACTTCCCGCTGGACTCGTCGTCCAACGAGAAGGGGCTTCTCCTCAATTTCGAGGACAGGAACGGCAAGCTGTGGCGCTTCAGGTACTCCTACTGGAACAGCAGCCAGAGCTACGTCATGACCAAAGGGTGGAGCCGTTTCGTGAAGGAGAAGAAGCTCGATGCCGGTGACATTGTGTCCTTCCAGCGCGGCCTCGGAGACTTGTACAGGCACAGGTTGTTCATAGACTGGAGGCGAAGGGATCATCCTCCCGATCACCCTTCCGCCTCCCTAATCACGCCTTTGTTCCTTCCCAATCACTACTCCTTCAGATGGGGTGGCAGGCTGTACTCTTTGCCTTCCCCGCAAGTCTCTTCCAATGTGCCTCGCCACCATGACCACTTTCATCAGCAGCTCAATTACAACCATATGTATGCCTTTCATCATCACCAGCAGCAGCAGCATCAGCATCAACATCAGCACCAGTACCATGCTGGTGGGAGTCACTTCAGCAGCTTTGGTGACATGAATTCGGGATCTGGGTCAGTTTATTACCTGAGGTCAACCCCGTCAATGTCAACGGTTGACCAAAACTTGGCGGGGCAACAACAAGAGAGAGGGACTATTGCCCCCATGATCATTGATTCTGTGCCGGTTGCTCATCATCATCACCACCACCATGGTGGAACTGGCAACAAGAGTGGAGGAGTAGTGGCTACTAGTAGTGGTAGTAATAGTACTGCGGGTAAACGGCTAAGGCTATTTGGGGTGAACATGGAATGTGCTTCTTCTTCTTCTAATTCAGCGGAGGAATCCAATTGCTTAATGTCCTCGGCTTCTGCAGCACATGTGACAATGGCTAATTCACTTCCTTCTTCTTCTCTTCATCGTTCATCGTCGTCATCGGCAAGGTTTGGGGATCAGAGAGGGGAAACTTCAGTGCGTTTTGATTTGGATCCCTCTTTGCAATACCGGCAGCGATCATCGGACTAA 1377 0.5105 MEEVKGYSDGREEEEDEEAAGIIAITTREEEEETNNRLHQQDAAPSFINHHRKQQQQLDFMDLSLGSNKDDGPNFQQGSSSSTQQHQYSHGHAGSSSTSNNEAPVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGLGDLYRHRLFIDWRRRDHPPDHPSASLITPLFLPNHYSFRWGGRLYSLPSPQVSSNVPRHHDHFHQQLNYNHMYAFHHHQQQQHQHQHQHQYHAGGSHFSSFGDMNSGSGSVYYLRSTPSMSTVDQNLAGQQQERGTIAPMIIDSVPVAHHHHHHHGGTGNKSGGVVATSSGSNSTAGKRLRLFGVNMECASSSSNSAEESNCLMSSASAAHVTMANSLPSSSLHRSSSSSARFGDQRGETSVRFDLDPSLQYRQRSSD* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3704 458 MobiDBLite consensus disorder prediction 286 300 - -
Dod01g3704 458 MobiDBLite consensus disorder prediction 362 376 - -
Dod01g3704 458 SUPERFAMILY DNA-binding pseudobarrel domain 108 202 IPR015300 -
Dod01g3704 458 MobiDBLite consensus disorder prediction 280 300 - -
Dod01g3704 458 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 55 422 IPR044800 GO:0003700
Dod01g3704 458 MobiDBLite consensus disorder prediction 1 106 - -
Dod01g3704 458 Gene3D - 105 222 IPR015300 -
Dod01g3704 458 ProSiteProfiles B3 DNA-binding domain profile. 111 216 IPR003340 GO:0003677
Dod01g3704 458 CDD B3_DNA 109 198 IPR003340 GO:0003677
Dod01g3704 458 MobiDBLite consensus disorder prediction 39 104 - -
Dod01g3704 458 MobiDBLite consensus disorder prediction 21 38 - -
Dod01g3704 458 MobiDBLite consensus disorder prediction 348 376 - -
Dod01g3704 458 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 55 422 - -
Dod01g3704 458 SMART B3_2 111 216 IPR003340 GO:0003677
Dod01g3704 458 MobiDBLite consensus disorder prediction 418 458 - -
Dod01g3704 458 Pfam B3 DNA binding domain 111 215 IPR003340 GO:0003677
Dod01g3704 458 MobiDBLite consensus disorder prediction 418 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3704 Dod-Chr1 78692798 78696191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3704 105 447 RAV Transcription Factor Family AT2G46870 46.552 5.56e-81 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dod01g3704 B3 1.4e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3704 - - lja:Lj3g3v2520080.1 422.935