Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3703 ATGGAGGGTGGGAATAGGGTTCCGGGGTCAGGTGAGGGTGACCCCTCTTACTGGCTGGACGCATGTGAGGACATATCATGCGATTTCATCGATTTTGATGTGTCTTCAATCGTGTCAGAGCAGCCTGATAACGCTTCCAACCAGGACTTCTTTGGTGGGATTGAACGAATCCTGGACAGCATCAAGAATGGTGGTGGCCTCCCTCTTGATTTGGAACCCAATCCCAATGCCACTGGTGAAGCAGCACCATGGCTGCCTCATGATGCCCCTTCTTCTGCACTCTCCAAGGTGCAGGCTTTGGCCCCAGTTGCTGGCACCAATGGCACTGTGGGAGATGATGGTTCTGTGAAGAATGAATTGGTTGGGGAGAAGCATGGTCGTGGTGCTGGTGATGCTCTTCAGAACTTGGGAGCTGAAAGTAACGCGATTAATAAGCTGTCAAATGGCAATGAAGGGGGGATTTTGGTTAATCATTCTGAGGAAAGTGGAGGTGTGAATAGAGGGCGCGAGCTGTTGAGGGAATATGATGTTGATGGTGAAGAGAGATACGGAAAAAGGGCAAGGCTTGGCAACTATAAGAATGAGAGGCATTACTCTGGTAGAGTGAATTATCAACTTAAGGAGAAAGAGAGGTGTTTTAATAATAGGAAGAGGCCACGGGATAGGGATGAGATTGATGCTAGGAGGGATAAAGACTGTGTCAGGAAAAGAGAACATTATGGTACTTGTGGCAGGAGAGATGTTAGAGATAGGGATTGGAGGGATAGAGAATCGAGGGGCTACTGGGAGAGGGATAAATCAGGTTCCAATGATATGGTTTTCCGCTTGGGCACTTGGGAAGCCGATCGGGATCGAGAAGAGAAAATGACAAATGACACAAAACAGGAAAGCAATGGAAAGCTTGAGAAGACATCTGAGGAGGCTAAGGAGAGGGTTCCTGAGGAAAAAGCTAGGCAGTATCAGTTGGATGTTCTTGAGCAGGCAAAGAAGAAAAATACTATAGCTTTTCTTGAAACTGGAGCAGGGAAGACCCTGATTGCCGTTCTTCTCATCAAAAGTATACACGAGAGTTTGCAACAGCAAAATAAGAAAATGCTTGCAGTATTCTTAGTTCCAAAAGTTCCACTTGTTTACCAGCAAGCTGAAGTAATACGTGAGCGGACTGGTTATCAAGTGGGCCACTATTGCGGAGAAATGGGGCAGGATTTCTGGGATGCTCGAAGGTGGCAGCGTGAATTTGACACTAAACATGTCTTAGTCATGACCGCTCAAATTCTTTTGAACATTTTGAGGCATAGCATAATTAAAATGGAAGCAATCAATCTCCTGATTCTTGATGAGTGCCATCATGCTGTCAAGAAGCATCCATATTCACTGGTGATGTCTGAGTTCTACCATACAACTCCCAAGGAGAAGAGGCCATCTGTATTTGGAATGACTGCGTCTCCTGTTAACTTGAAGGGTGTCTCCAGCCAAGTAGATTGTGCAATAAAAATTCGTAATCTTGAAAGTAAGCTAGATTCAATAGTTTGTACCATTAAAGATCGTAAGGAGCTGGAGAAACATGTGCCAATGCCCTCTGAAGTTGTGGAGGAGTATGACAAAGCAGCCAGTTTGTATTATCTACATGAACAAATAAAGCAGATGGAGGTTGAAGTTGAAGAGGCTGCCAAATCGAGTTCAAGGAGAAGCAAATGGCAGTTTATGGGAGCTAGAGATGCTGGAGCAAAGGAAGAGCTGCGCCAAGTATATGGTGTTTCTGAAAGAACAGAAAGTGATGGAGCTGCAAACCTGATTCAGAAGTTGAGAGCTATCAATTATGCACTATGTGAACTGGGGCAGTGGTGTGCATATAAGGTTGCACAATCTTTTCTAGCAGCTTTGCAAAATGATGAAAGGGCAAACTATCAACTGGATGTCAAGTTTCAGGAATCTTATCTGAGTAAAGTTGTCTCTCTTCTGAAATGTCAACTGTCAGAGGGTGCAGCTTCTGACAAAAATGCTGCAGATGATGATTTAGAGAATGGGGCAGCTCACAGTGGGTCTGAACCTGAAGAGATTGAGGAAGGAGAGCTTCCAGACAGTCATGTTGTATCTGGCGGGGAGCATGTGGATGTCATAATAGGAGCTGCTGTGGCTGATGGAAAGGTGACTCCCAAGGTGCAGGCACTGATCAAAATACTTCTAAAGTATCAGCACACAGAAGACTTCCGTGCAATCATTTTTGTTGAGCGTGTTGTGTCTGCATTAGTTCTACCGAAGGTCTTTGCAGAGCTTCCATCTCTTAGTTTTGTGAAGTGTGCAAGCTTGATTGGACACAACAATAGTCAGGAAATGCGAACTTACCAAATGCAGGATACAATTGCTAAGTTCCGTGATGGGCGGGTCACATTATTAGTTGCTACTAGTGTTGCTGAAGAAGGACTTGATATCCGGCAATGCAATGTTGTTATTCGCTTTGACCTTGCAAAGACCGTTCTGGCATACATTCAGTCTAGGGGCCGTGCTAGAAAGCCTGGGTCTGATTACATCCTGATGGTTGAGAGGGGGAATTTGTCACATGAAGCATTCCTTAGGAATGCCAGAAACAGTGAGGAGACTTTGCGCAAAGAAGCAATAGAGAGAACAGACCTTAGTCATCTAAAAGACACTTCAAGATTGATTTCAGTAGATAGCCGGCCAGGAACAGTTTACCAAGTAGAGTCAACCGGTGCAGTTGTGAGCTTAAATTCTGCTGTAGGTCTTATCCACTTCTACTGCTCTCAGCTTCCAAGTGACAGATATTCAATTCTTCGTCCTGAGTTCATTATGGAGAAACATGAAAAACCAGGAGGTCCCGTTGAATATTCTTGCAAGCTTCAACTGCCTTGTAATGCGCCATTTGAAAATCTTGAGGGTCCCATCTGCAGTTCAATGCGCCTGGCACAACAGGCTGTTTGTCTGGCTGCTTGCAAGAAGCTGCATGAGATGGGAGCATTCACTGACATGCTGTTGCCTGATAAAGGAAGTGGGGGAGAAAGAGAAAAGGCTGAGCAAAATGATGAAGGAGATCCACTTCCGGGAACTGCTAGACATAGGGAGTTCTATCCTGAAGGCGTGGCTGACATACTGAAGGGAGAATGGATCTTATCTGGAAAAGATGATTGCAACAACTCCAAATTGTTTCATCTTTATATGTATGCCATGAAGTGCGAAAATGTAGGCAATTCAAAGGATCCATTCTTGACTCAAGTTTCAGATTTTGCAGTACTTTTTGGCAATGAGCTGGATGCAGAGGTGTTATCGATGTCAATGGATCTATTTATCGCTCGAACTGTGACTACAAAGGCATCTCTTGTCTTTAGTGGGTCGATAGATATCAATGAGAGTCAGTTGGCATCCCTGAAAAGCTTTCATGTGAGATTAATGAGCATTGTCTTGGATGTGGATGTTGAACCGTCTACCACTCCTTGGGATCCTGCAAAAGCATATTTGTTTGTCCCAATGATTAGCGATAAGTCTATAGATCCTATGAACCAAATTGACTGGCATCTGGTTGAGACAATAATTGGAGCTGATGCATGGAAAAATCCCCTCCAGAGGGCTCGACCAGATGTTTACCTTGGCACTAATGAGAGAACATTAGGTGGAGATAGAAGGGAATATGGATTTGGGAAATTGCGTCATGGCATGGCTTTTGGGCAAAAAGCACATCCAACCTATGGAATCAGAGGAGCTGTGGCCCAGTTTGATGTGGTCAAAGCTTCAGGATTGGTTCCTATCAGGGATGCTATGCCAATGCAAAAAAATATCAATTTGACTACCAATGGAAAATTGATGATGGCAGATACCTGTATAAATGCAGAGGATCTGGTAGGGAAAATTGTAACTGCTGCTCACTCAGGGAAGAGGTTTTATGTTGATTCAATACGCTATGATATGTCTGCAGAGAACTCTTTCCCTAGGAAAGAAGGTTATCTTGGTCCTCTAGAGTACAGTTCATATGCTGATTACTACAAGCAAAAGTATGGCGTTGATTTGATTTACAAGCAGCAACCTCTTATAAGAGGGCGTGGTGTGTCATACTGCAAGAATCTTCTGTCCCCTCGATTTGAACACAGTGAAGCACATGAAGGGGAATCTGAAGAATCTCATGACAAAACTTATTATGTGTTCCTTCCTCCTGAGCTATGCCTGGTACACCCTCTGCCTGGATCACTAGTTCGTGGTGCCCAGAGGTTGCCTTCAATCATGAGGAGGATTGAAAGTATGCTGCTTGCGGTTCAGCTTAAGAACATGATTAATTTTCCTGTTCAGGCCTTGAAGATCTTGGAAGCCTTGACTGCTGCATCTTGCCAGGAGACATTCTGCTATGAAAGGGCAGAGCTTCTAGGAGATGCTTACCTCAAATGGGTCGTTAGTCGATTTCTTTTCCTAAAATACCCACAGAAACATGAGGGCCAGCTTACTAGGATGAGGCAACAAATGGTCAGTAACATGGTATTATATCAGTATGCATTAAGTAAAGGGCTTCAATCATATATTCAAGCAGATCGCTTTGCCCCATCAAGATGGGCAGCTCCTGGGGTGCTTCCGGTTTTTGATGAGGATACTAAGGATGGAGAGTCGTCTTTGTTTGACCAGGAGAGATCCATTTCTAAGACTGAGAAGATGGATTTTCACACTGATGAATATGAAGATGAACTGGAAGATGGTGAGCTTGAGAGCGATTCAAGTTCTTACAGAGTACTGTCCAGCAAGACACTTGCAGATGTCGTGGAAGCATTGATTGGGGTATATTATGTCCAAGGTGGTAAGAGTGCTGCTAACCACCTTATGAACTGGATTGGCATCCAGATAGATTTTGATCCTGATGAGATGGATTGTACAAGGAAGCCATTTAATGTTCCAGACAGCATACTTAGAAGTGTTGATTTTGATGCTTTAGAAGGTGCTTTGAATAAGAAATTTAAAGACGGGGGGCTACTGGTAGAAGCCATAACTCATGCCTCCAGACCATCATCAGGTGTATCCTGTTATCAGCGTCTGGAGTTCGTTGGTGATGCAGTCTTGGACCATCTTATCACGAGGCATTTGTTTTTTACTTACACAAATCTGCCACCTGGACGTCTGACTGACCTTCGGGCTGCTGCTGTAAACAATGAAAATTTTGCCCGTGTTGCAGTTAAACACAGTCTTCATGTGCATCTCCGGCATGGGTCCAGTGCCCTAGAAAAACAGATTAAAGAATTTGTCAAGGAAGTTCAAGATGAATTGTCAAAGCCAGGCTTTAACTCCTTTGGTCTGGGAGACTGCAAAGCTCCCAAGGTTCTTGGTGACATTGTTGAATCTATTGCTGGAGCCATTTTTCTTGATAGTGGGAGGGATACTGCTGTTGTTTGGAAGGTTTTTCAGCCTCTTCTGCATCCCATGGTTACCCCAGAGACTCTGCCAATGCATCCTGTGCGTGAGCTGCAAGAGCGATGCCAGCAGCAGGCGGAAGGCTTAGAATATAAAGCAAGTCGTATTGGCAATCTGGCCACTGTTGAAGTATTTATTGATGGTGTGCAGGTAGGGGCTGCTCAAAATCCACAGAAAAAAATGGCACAGAAATTAGCTGCAAGAAATGCCCTTGCTGCTTTGAAAGAGAGGGAAGTGGCAAAAAATGAGAAGAATGATGAAAATGGGAAAAAGAATGGAAACCAGACATTTACTAGACAAACTTTAAACGATATCTGCTTGCGAAGAAATTGGCCTATGCCGCTCTACCGATGTGTGAATGAGGGTGGTCCAGCACATGCAAAGAGGTTTACATTTGCAGTGCGTGTCAATACTACTGATAGAGGATGGACGGATGAATGTATTGGAGAGCCAATGCCAAGCGTCAAGAAGGCCAAAGACTCAGCTGCTGTTCTTCTCTTAGAACTACTAAATAAATTATACTCATGA 5928 0.4416 MEGGNRVPGSGEGDPSYWLDACEDISCDFIDFDVSSIVSEQPDNASNQDFFGGIERILDSIKNGGGLPLDLEPNPNATGEAAPWLPHDAPSSALSKVQALAPVAGTNGTVGDDGSVKNELVGEKHGRGAGDALQNLGAESNAINKLSNGNEGGILVNHSEESGGVNRGRELLREYDVDGEERYGKRARLGNYKNERHYSGRVNYQLKEKERCFNNRKRPRDRDEIDARRDKDCVRKREHYGTCGRRDVRDRDWRDRESRGYWERDKSGSNDMVFRLGTWEADRDREEKMTNDTKQESNGKLEKTSEEAKERVPEEKARQYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIKSIHESLQQQNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFDTKHVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSIVCTIKDRKELEKHVPMPSEVVEEYDKAASLYYLHEQIKQMEVEVEEAAKSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALCELGQWCAYKVAQSFLAALQNDERANYQLDVKFQESYLSKVVSLLKCQLSEGAASDKNAADDDLENGAAHSGSEPEEIEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQHTEDFRAIIFVERVVSALVLPKVFAELPSLSFVKCASLIGHNNSQEMRTYQMQDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDSRPGTVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMEKHEKPGGPVEYSCKLQLPCNAPFENLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGGEREKAEQNDEGDPLPGTARHREFYPEGVADILKGEWILSGKDDCNNSKLFHLYMYAMKCENVGNSKDPFLTQVSDFAVLFGNELDAEVLSMSMDLFIARTVTTKASLVFSGSIDINESQLASLKSFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPMISDKSIDPMNQIDWHLVETIIGADAWKNPLQRARPDVYLGTNERTLGGDRREYGFGKLRHGMAFGQKAHPTYGIRGAVAQFDVVKASGLVPIRDAMPMQKNINLTTNGKLMMADTCINAEDLVGKIVTAAHSGKRFYVDSIRYDMSAENSFPRKEGYLGPLEYSSYADYYKQKYGVDLIYKQQPLIRGRGVSYCKNLLSPRFEHSEAHEGESEESHDKTYYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRIESMLLAVQLKNMINFPVQALKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGESSLFDQERSISKTEKMDFHTDEYEDELEDGELESDSSSYRVLSSKTLADVVEALIGVYYVQGGKSAANHLMNWIGIQIDFDPDEMDCTRKPFNVPDSILRSVDFDALEGALNKKFKDGGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTNLPPGRLTDLRAAAVNNENFARVAVKHSLHVHLRHGSSALEKQIKEFVKEVQDELSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTAVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKASRIGNLATVEVFIDGVQVGAAQNPQKKMAQKLAARNALAALKEREVAKNEKNDENGKKNGNQTFTRQTLNDICLRRNWPMPLYRCVNEGGPAHAKRFTFAVRVNTTDRGWTDECIGEPMPSVKKAKDSAAVLLLELLNKLYS* 1976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3703 1975 Pfam PAZ domain 1275 1415 IPR003100 GO:0005515
Dod01g3703 1975 SMART ultradead3 313 516 IPR014001 -
Dod01g3703 1975 CDD DEXHc_dicer 316 515 - -
Dod01g3703 1975 ProSiteProfiles PAZ domain profile. 1252 1395 IPR003100 GO:0005515
Dod01g3703 1975 Gene3D paz domain 1272 1393 - -
Dod01g3703 1975 MobiDBLite consensus disorder prediction 1001 1024 - -
Dod01g3703 1975 CDD SF2_C_dicer 717 847 - -
Dod01g3703 1975 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1897 1972 IPR014720 -
Dod01g3703 1975 ProSiteProfiles Ribonuclease III family domain profile. 1438 1598 IPR000999 GO:0004525|GO:0006396
Dod01g3703 1975 ProSitePatterns Ribonuclease III family signature. 1674 1682 IPR000999 GO:0004525|GO:0006396
Dod01g3703 1975 Gene3D Dicer dimerisation domain 907 1008 IPR038248 -
Dod01g3703 1975 Pfam Ribonuclease III domain 1674 1787 IPR000999 GO:0004525|GO:0006396
Dod01g3703 1975 Pfam Ribonuclease III domain 1452 1598 IPR000999 GO:0004525|GO:0006396
Dod01g3703 1975 SUPERFAMILY dsRNA-binding domain-like 1901 1971 - -
Dod01g3703 1975 Gene3D Ribonuclease III domain 1415 1610 IPR036389 GO:0004525|GO:0006396
Dod01g3703 1975 Gene3D Ribonuclease III domain 1635 1808 IPR036389 GO:0004525|GO:0006396
Dod01g3703 1975 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1813 1876 IPR014720 -
Dod01g3703 1975 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1897 1970 - -
Dod01g3703 1975 Pfam Type III restriction enzyme, res subunit 318 483 IPR006935 GO:0003677|GO:0005524|GO:0016787
Dod01g3703 1975 ProSiteProfiles Ribonuclease III family domain profile. 1639 1787 IPR000999 GO:0004525|GO:0006396
Dod01g3703 1975 SMART DRBM_3 1898 1971 IPR014720 -
Dod01g3703 1975 SMART DRBM_3 1814 1875 IPR014720 -
Dod01g3703 1975 SUPERFAMILY dsRNA-binding domain-like 1769 1892 - -
Dod01g3703 1975 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 364 851 IPR027417 -
Dod01g3703 1975 SMART helicmild6 753 839 IPR001650 -
Dod01g3703 1975 SUPERFAMILY PAZ domain 1273 1395 IPR036085 GO:0005515
Dod01g3703 1975 CDD PAZ_CAF_like 1248 1397 - -
Dod01g3703 1975 Gene3D - 311 555 IPR027417 -
Dod01g3703 1975 CDD RIBOc 1655 1810 IPR000999 GO:0004525|GO:0006396
Dod01g3703 1975 Coils Coil 291 311 - -
Dod01g3703 1975 Gene3D - 1903 1973 - -
Dod01g3703 1975 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 912 1007 IPR005034 GO:0016891
Dod01g3703 1975 SUPERFAMILY RNase III domain-like 1411 1616 IPR036389 GO:0004525|GO:0006396
Dod01g3703 1975 CDD RIBOc 1436 1616 IPR000999 GO:0004525|GO:0006396
Dod01g3703 1975 MobiDBLite consensus disorder prediction 998 1024 - -
Dod01g3703 1975 PANTHER DICER-RELATED 272 1973 - -
Dod01g3703 1975 Gene3D - 1811 1889 - -
Dod01g3703 1975 Gene3D - 710 876 IPR027417 -
Dod01g3703 1975 SMART riboneu5 1434 1618 IPR000999 GO:0004525|GO:0006396
Dod01g3703 1975 SMART riboneu5 1654 1810 IPR000999 GO:0004525|GO:0006396
Dod01g3703 1975 SMART PAZ_2_a_3 1255 1419 IPR003100 GO:0005515
Dod01g3703 1975 SUPERFAMILY RNase III domain-like 1638 1808 IPR036389 GO:0004525|GO:0006396
Dod01g3703 1975 MobiDBLite consensus disorder prediction 665 691 - -
Dod01g3703 1975 Pfam Dicer dimerisation domain 912 1000 - -
Dod01g3703 1975 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 724 884 IPR001650 -
Dod01g3703 1975 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 324 501 IPR014001 -
Dod01g3703 1975 MobiDBLite consensus disorder prediction 284 313 - -
Dod01g3703 1975 CDD DSRM_DCL_plant 1903 1964 - -
Dod01g3703 1975 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 1 272 1973 - -
Dod01g3703 1975 Pfam Helicase conserved C-terminal domain 720 837 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3703 Dod-Chr1 78604686 78616526 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3703 736 879 Eukaryotic Initiation Factors Gene Family AT5G11200 29.252 2.00e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3703 K11592 - gmx:100811631 3378.96