Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3688 ATGATAGATAGCTTAGAAGTGAATGTAACACGTCATGAGCTGAGCCTCTTTCATTTCACTTCTCTGTTTTGTTTTGCTACTACCGGCAGGCGAAAGAGAATGGCAGCTAATGCTAGTTTGTCACTTTGTTTTGCTTCTTCTCCTTGTTGTTCTTTGTCGCGGTTGAAGCACAACAGGCCCGGATTCGTGGGTACAGGGAAACGGTTCGTTTCGTGTTCAGCGGCGCCTTTGTCTTGTTTGTGGCTGGGTGGTGCTGCTGCTGTCGTCTTCAGCTCCAAATCTACGGTTTTTACGGCCTTGGCGGCGGTGGTGGATGAAGAAGCGGCGCTGGAGCAAGGGATTGACGGAGGAGGAGGAGAAGGTGTGGAGGGTTCTGAGGAGGAACGGCAGTGGAAGCTGCCAAGAGCGACGGAAGTGTACGTCTGCAACCTCCCAAGGAGCTGTGACGCCCAACAGCTACGTCATATGTTCGAGCCTCACGGAACTATTCTATCCGCAGAGATTTGCCGGAATGCTGAGACAGGTGAAAGTAGAGGGTGTGCTTATGTGACAATGGGATCTATTACCTCAGCAAGAAATGCTGTCACTGCATTGGATGGAACGGATGTTGGTGGGCGCGAGATGCGGGTAAGATTCTCGGTTGAGATGAATCCCCAGAGGAGGGATCTTGAGACAATGAACACGTCACCCAGGAAAGTTATATACTATGAAGCTCCACATAAGTTGTACGTTGGGAATCTTGCTAGGGCTGTTAGACCTGAAGACTTGAGACATCTTTTTAGTAAATTTGGTAATGTGGCTAGTGTACGATTGTTGCAAGACCGGAAACAAGGGCGAACTCGGGTTTATGCATTTCTCTCTTTCCTATCTGAGAGAGAACGTGATGCTGCATTGACCCTCCATGGAACAGAATTGTGTGGTCGTACACTAGTGGTTAGAGAGGGTGTAGAGAAGGGTGAAACTTAA 966 0.4896 MIDSLEVNVTRHELSLFHFTSLFCFATTGRRKRMAANASLSLCFASSPCCSLSRLKHNRPGFVGTGKRFVSCSAAPLSCLWLGGAAAVVFSSKSTVFTALAAVVDEEAALEQGIDGGGGEGVEGSEEERQWKLPRATEVYVCNLPRSCDAQQLRHMFEPHGTILSAEICRNAETGESRGCAYVTMGSITSARNAVTALDGTDVGGREMRVRFSVEMNPQRRDLETMNTSPRKVIYYEAPHKLYVGNLARAVRPEDLRHLFSKFGNVASVRLLQDRKQGRTRVYAFLSFLSERERDAALTLHGTELCGRTLVVREGVEKGET* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3688 321 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 240 317 IPR000504 GO:0003723
Dod01g3688 321 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 89 320 - -
Dod01g3688 321 PANTHER OS02G0815200 PROTEIN 89 320 - -
Dod01g3688 321 SMART rrm1_1 241 313 IPR000504 GO:0003723
Dod01g3688 321 SMART rrm1_1 138 211 IPR000504 GO:0003723
Dod01g3688 321 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 139 209 IPR000504 GO:0003723
Dod01g3688 321 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 242 310 IPR000504 GO:0003723
Dod01g3688 321 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 137 215 IPR000504 GO:0003723
Dod01g3688 321 SUPERFAMILY RNA-binding domain, RBD 134 221 IPR035979 GO:0003676
Dod01g3688 321 Gene3D - 227 321 IPR012677 -
Dod01g3688 321 Gene3D - 105 225 IPR012677 -
Dod01g3688 321 SUPERFAMILY RNA-binding domain, RBD 238 319 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3688 Dod-Chr1 78353356 78355600 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3688 135 320 Eukaryotic Initiation Factors Gene Family AT3G16380 28.342 1.15e-15 75.9