Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3685 ATGTCGGCTTCAGAGGCTGCTTGCAGCTACGCTCTTTTGATCCTAAACGAAGAACAAATCCCTGTCACCGCTGACAAGATCTCTACCTTGTTGAAAAGCGCAAAGGTTCAAGTTGAATCATATTGGCCCGGCTTGTTTGCTCAACTTGCTGAAAAGCGAAGTCTTGATGATCTGATCGCTGGTGCCGGTGGAGGTGGTGCTCCAGTTGTTGTTGCAGCCGCCCCAGTTGCTGCTGCAGGTGGTGGTGGTGGTGCTGCAGCTGCTCCTGCTGCTGAGGAGAAGAAGAAGGAAGAACCCCAAGAAGAGAGTGACGATGATATGGGATTCAGCTTGTTTGATTAG 342 0.5088 MSASEAACSYALLILNEEQIPVTADKISTLLKSAKVQVESYWPGLFAQLAEKRSLDDLIAGAGGGGAPVVVAAAPVAAAGGGGGAAAAPAAEEKKKEEPQEESDDDMGFSLFD* 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3685 113 MobiDBLite consensus disorder prediction 79 113 - -
Dod01g3685 113 Hamap 50S ribosomal protein L12 [rpl12]. 6 113 IPR027534 GO:0003735|GO:0005840|GO:0006414
Dod01g3685 113 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN 1 106 - -
Dod01g3685 113 CDD Ribosomal_P1 5 59 - -
Dod01g3685 113 Gene3D - 1 63 IPR038716 -
Dod01g3685 113 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 106 - -
Dod01g3685 113 Pfam 60s Acidic ribosomal protein 22 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3685 Dod-Chr1 78338224 78339499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3685 1 113 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 48.276 4.52e-32 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3685 K02942 - ncol:116248277 114.005