Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3669 ATGTTAGATCACATGGAAGAATATTCCCATTCATCAGAAGCTACAGATGCAGAGAACTATAGCAGCACAACTCCACCCGCAGCCATGAGAAAGAAAAGGAGTACCAGAAACAAGAGAAGATTCAGCGATGAACAAATCAAGTCATTGGAATCAATGTTTCAGACAGAGTCCAGGCTGGAACCTGTAAAGAAGATGCAGTTGGCAAGAGAGCTCGGGTTGCACCCACGACAGGTTGCTATATGGTTTCAGAACAAGAGAGCTCGATGGAAGTCAAAGCAGCTTGAGCGAGACTACACCATACTTCGAGCCAATTATAACTGTTTGGCTTCACGCTTTGATGCTCTCAAGAAGGAGAAGCAGGCATTAATAATACAGTTGCAGATGCTGAATGATCGAATAAAGAAGCCACCAGAGGAAACCCAAGATAAAGGAGCAAACAGCATGTGCAATGAATCAGAGAATGGAGACACCAACAGAAGTGAACCGGAGGCAAAGCCAAGCCCATCAACGGAAAGATCAGAAAACGTGCTTGGTGTTGTGTCGGACGGTGACAGCACTGTAAGGGCAGAAGAATACTTTTGCCTGGAAGATGAACCTGGCCTTCTGAATTTTGTTAAGCATGCTGATGGAACTTTGAAATCAGCAGAAGATTGGGATAACTTCGACTCCAGTGATCTCTTAGGCCAATCAACCAGTGATTATCAATTGTGGGACTTCTGGTCCTGA 726 0.4477 MLDHMEEYSHSSEATDAENYSSTTPPAAMRKKRSTRNKRRFSDEQIKSLESMFQTESRLEPVKKMQLARELGLHPRQVAIWFQNKRARWKSKQLERDYTILRANYNCLASRFDALKKEKQALIIQLQMLNDRIKKPPEETQDKGANSMCNESENGDTNRSEPEAKPSPSTERSENVLGVVSDGDSTVRAEEYFCLEDEPGLLNFVKHADGTLKSAEDWDNFDSSDLLGQSTSDYQLWDFWS* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3669 241 MobiDBLite consensus disorder prediction 134 181 - -
Dod01g3669 241 MobiDBLite consensus disorder prediction 1 42 - -
Dod01g3669 241 Pfam Homeodomain 36 90 IPR001356 GO:0003677
Dod01g3669 241 SMART HOX_1 34 96 IPR001356 GO:0003677
Dod01g3669 241 ProSiteProfiles 'Homeobox' domain profile. 32 92 IPR001356 GO:0003677
Dod01g3669 241 ProSitePatterns 'Homeobox' domain signature. 67 90 IPR017970 GO:0000981|GO:0006355
Dod01g3669 241 Pfam Homeobox associated leucine zipper 92 132 IPR003106 GO:0006355|GO:0043565
Dod01g3669 241 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-7 6 241 - -
Dod01g3669 241 MobiDBLite consensus disorder prediction 14 30 - -
Dod01g3669 241 PRINTS Lambda-repressor HTH signature 72 88 IPR000047 GO:0003677
Dod01g3669 241 PRINTS Lambda-repressor HTH signature 63 72 IPR000047 GO:0003677
Dod01g3669 241 Coils Coil 112 132 - -
Dod01g3669 241 Gene3D - 27 99 - -
Dod01g3669 241 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 6 241 IPR045224 GO:0003700
Dod01g3669 241 CDD homeodomain 36 93 IPR001356 GO:0003677
Dod01g3669 241 SUPERFAMILY Homeodomain-like 18 94 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3669 Dod-Chr1 78138913 78140807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3669 22 241 Homeobox Transcription Factor Family AT2G46680 49.180 7.26e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dod01g3669 Homeodomain 4.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3669 K09338 - gmx:100811208 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3669 01 78138913 78140807 Dod07g2101 07 52173983 52175847 PCT