Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3659 ATGATGGTGCTAGATGTATTGACTTCTGGTCCTACTACAGAAGCCATTTCTCAAATTATAGATACCATTGGTGAGTTTGTAATTTATGCTAGTGATGTCCTTGTGAAGAAGGATAGTTTTGAGGAACTTGCAGCTTACTTGGAAAGAGTTGCACCCATCTTAAAAGAATTGAGGAAAGAAAAAGTCAGTGATTCTGAGACATTCAACCATGCCATTGAGGTTCTGAACCGTGAAGTAAAAGATGCAAAGCAACTGGGCCAAGAATGCTGCAAGAAGAGCCGGGTATATCTCCTAATGAACTGCAGATCCATTGTTAAGCGTTTGCAAAACCACTCAAGTGAGATCAGCAAGGCGATTGGTCTTCTTCCTTTGGCCACAAAAGGTCTTTCCAATGAAATCATTGAAGAAATTGAAAAGCTACATGAGAATATGCAAGCAGCTGAGTTTAAGGCAGCCATAGCAGAAGAAGAGATTTTAGAGAAAATTGAGTCAGGGATACAGGGAAAGAATGTCGATCGCTCCTATGCAAATAATTTGCTGGTTCTCATTGCTGAGGCTGTTGGGATTACAAATGAGAAGTCGACAATGAAGAAGGAAATTGAAGAGTTCAAGAGTGAAATCGAAAATGCCCGGCTAAGGAAGGACCTGGCTGAAGCCATACAAATGGATCAGATCATTGCTTTGTTGGAAAGGGCTGATGTAGCCTCATCACCTAGGGAAAAGGAACTCAAGTACTTTGCCAAACGCAAATCTTTGGGTAGTCAACCCTTGGATCCTTTAGGGTCTTTTTATTGCCCCATTACACAGGATGTCATGGTTGACCCTGTAGAAACTTCGTCTGGGCAAACATTTGAGAGAAGTGCAATAGAGAAGTGGTTTGCAGAAGGAAACCAATTGTGTCCTTTGACCATGACTCCGTTAGACACGTCAGTTTTGAGACCCAACAAAACCTTGAAACAATCAATAGAAGAATGGAAAGATAGAAATACAATGATTACAATTGCTTCATTGAAAGAAAAAATCCAATCAGGAGATGCTGAGGAAGTACTGCGTTGTCTGCAAACTCTTCAAACATTGTGTGAACAAAAGGAACAGCACAGAGAATGGGTGATACTGGAGAATTACATACCTGTGCTAATCCAAATTCTTAATGTTAAAAACCGTGATGTTAGGAATAATGCCCTTGTCATTCTTTGCATGCTGGCTAAGGATAGTGAAGATGCTAAGGAAAGAATTGCAAAGGTTGATAATGCAATTGAGACTATTGTACATTCTCTTGGACGCCGTTTGGGGGAAAGGAAGTTGGCAGTGGGCTTACTGCTGGAGCTCTCCAACTATGATTTGCTAAGAGAATACATTGGAAAAGTTCAAGGTTGCATACTACTATTGGTGACAATGTCTAGTGGTGATGATAATCAATCTGCCAGAGATGCAACAGAGCTGCTGGAAAAGCTTTCATTCTCTGACCAGAATGTTATACAGATGGCAAAGGCAAATTATTTCAAGCACTTATTGCAGCGTCTCTCCACAGGATCAGATGATGTGAAGATGGTTATGGCCAAAACTTTAGCAGAAATGGAGTTAACTGACCATAATAAGGAGTCCTTGTTTGACAGTGGTGTACTTGCTCCTCTTCTTCATTTGGTCTCACATAATGATGTTCAGGTGAAAATAGTGGCCATTAAAGCTCTTAGGAATCTGTCCAGTTTAAATAAAAATGGACTCGAAATGATTCGACAAGGTGCAACACGTCCATTACTTGACATTCTTTTCCAGCACAGCATTCCATCCTCAAGTTTGCAGGAACATGTTGCACCAATGATTATGCAGCTTGCTGCATCAACAATCTCTCAAGACGCCCAGATACCAGTTTCACTACTAGAACATGATGAGGACGTTTTTCACCTTTTCTCTCTGATTAGCTACCCTGTGCCTGATGTGTGGGAATACACTATTCAGACTTTTTATGCCTTGTGCCAGTCGCCCTCAGCTCCATTTATTAGGACCAAGCTAAGAGAGTGCCCAGCTGTTCAAGTATTGGTTAAGTTGTTTGAGAATGAAAACCTAAATCTACGAGCAAGTGCAGTAAAGCTTCTTTCCTGCCTAGTAGAAGGTTGTGATGAAGCCATCATACTCGAGAATGTGAATCAGAAGTGCATTGAGACTTTACTTAGAATCCTGAAATCGTCATCCGATGAAGAGGAAATTGTCTCTGCTATGGGAATAATATGCTGTCTACCAGAAATTAACCAGATTACTCAGTGGCTTTTGGATGCTGGTGCACTGCCAATCATTTATAATTACATCCAAGAAGGGAAGGACAAAGATCTTCAAAAGAGTAAGTTGGTGGAGAATTCTGTTGGTGCCTTGCGTCGTTTTATAGTCCCAACAAACTTGGAATGGCAAAAGAGAGCAGCAGAAACTGGGATTATAAGTGTTCTAGTACAGTTGCTGCAAAGTGGAACCACGTTAACAAAACAACGTGCAGCATTGTCTCTTTCTCAATTTTCTAAAAGTTCAAATGGGCTGAGCAGGCCATTGCCAAAGCGCAAGGGACTTTGGTGCTTCTCAGCCCCAGCGGCAAAAAGTGGATGCCCAGTTCATGGGGGACTATGCACTGTCAAATCATCATTTTGCCTTCTGGAGGCTGAAGCAGTGAGACCACTGGCAAACACTCTCGGGGAATCTGATCCTGGAGTTTGTGAGGCTGCTTTAGATGCTCTATTAACTTTAATTGAAGCTGAAAAACTTCAGAGTGGTAGTAAAGTTCTTGCAGAAGCAAATGCCATACCACTAATAATAAGATTCATCGGTTCCCCTTCTCCTGGATTGCAGGAAAAGTCTCTGCGCGCCTTGGAAAGGATTTTTCGGCTAGTGGAGTTCAAACAGATGTATGGAGCCTCAGCTCAAATGCCTCTAGTTGACTTAACTCAGCGGGGTAATGGTAGTATGAAATCCCTGGCAGCTCAAATATTGGCACATTTGAATGTGCTCCATGATCAATCTTCATATTTCTAA 3018 0.4165 MMVLDVLTSGPTTEAISQIIDTIGEFVIYASDVLVKKDSFEELAAYLERVAPILKELRKEKVSDSETFNHAIEVLNREVKDAKQLGQECCKKSRVYLLMNCRSIVKRLQNHSSEISKAIGLLPLATKGLSNEIIEEIEKLHENMQAAEFKAAIAEEEILEKIESGIQGKNVDRSYANNLLVLIAEAVGITNEKSTMKKEIEEFKSEIENARLRKDLAEAIQMDQIIALLERADVASSPREKELKYFAKRKSLGSQPLDPLGSFYCPITQDVMVDPVETSSGQTFERSAIEKWFAEGNQLCPLTMTPLDTSVLRPNKTLKQSIEEWKDRNTMITIASLKEKIQSGDAEEVLRCLQTLQTLCEQKEQHREWVILENYIPVLIQILNVKNRDVRNNALVILCMLAKDSEDAKERIAKVDNAIETIVHSLGRRLGERKLAVGLLLELSNYDLLREYIGKVQGCILLLVTMSSGDDNQSARDATELLEKLSFSDQNVIQMAKANYFKHLLQRLSTGSDDVKMVMAKTLAEMELTDHNKESLFDSGVLAPLLHLVSHNDVQVKIVAIKALRNLSSLNKNGLEMIRQGATRPLLDILFQHSIPSSSLQEHVAPMIMQLAASTISQDAQIPVSLLEHDEDVFHLFSLISYPVPDVWEYTIQTFYALCQSPSAPFIRTKLRECPAVQVLVKLFENENLNLRASAVKLLSCLVEGCDEAIILENVNQKCIETLLRILKSSSDEEEIVSAMGIICCLPEINQITQWLLDAGALPIIYNYIQEGKDKDLQKSKLVENSVGALRRFIVPTNLEWQKRAAETGIISVLVQLLQSGTTLTKQRAALSLSQFSKSSNGLSRPLPKRKGLWCFSAPAAKSGCPVHGGLCTVKSSFCLLEAEAVRPLANTLGESDPGVCEAALDALLTLIEAEKLQSGSKVLAEANAIPLIIRFIGSPSPGLQEKSLRALERIFRLVEFKQMYGASAQMPLVDLTQRGNGSMKSLAAQILAHLNVLHDQSSYF* 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3659 1005 Gene3D - 12 127 IPR036537 GO:0007166
Dod01g3659 1005 Coils Coil 193 220 - -
Dod01g3659 1005 Pfam Armadillo/beta-catenin-like repeat 530 569 IPR000225 GO:0005515
Dod01g3659 1005 SUPERFAMILY ARM repeat 334 995 IPR016024 -
Dod01g3659 1005 SUPERFAMILY RING/U-box 251 331 - -
Dod01g3659 1005 Coils Coil 130 157 - -
Dod01g3659 1005 Gene3D - 871 1003 IPR011989 -
Dod01g3659 1005 SMART arm_5 529 569 IPR000225 GO:0005515
Dod01g3659 1005 SMART arm_5 873 913 IPR000225 GO:0005515
Dod01g3659 1005 SMART arm_5 363 403 IPR000225 GO:0005515
Dod01g3659 1005 SMART arm_5 570 613 IPR000225 GO:0005515
Dod01g3659 1005 SMART arm_5 663 704 IPR000225 GO:0005515
Dod01g3659 1005 SMART arm_5 405 445 IPR000225 GO:0005515
Dod01g3659 1005 SMART arm_5 706 745 IPR000225 GO:0005515
Dod01g3659 1005 SMART arm_5 749 795 IPR000225 GO:0005515
Dod01g3659 1005 SMART arm_5 917 957 IPR000225 GO:0005515
Dod01g3659 1005 CDD RING-Ubox_PUB 263 304 IPR045210 -
Dod01g3659 1005 Gene3D - 531 853 IPR011989 -
Dod01g3659 1005 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
Dod01g3659 1005 Pfam U-box domain 263 329 IPR003613 GO:0004842|GO:0016567
Dod01g3659 1005 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
Dod01g3659 1005 Gene3D - 337 530 IPR011989 -
Dod01g3659 1005 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 540 582 IPR000225 GO:0005515
Dod01g3659 1005 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 1005 - -
Dod01g3659 1005 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 336 IPR013083 -
Dod01g3659 1005 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 1005 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3659 Dod-Chr1 77968504 77975838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3659 262 1005 U-box Gene Family AT1G76390 29.008 2.30e-61 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3659 - - gmx:100799969 1456.04