Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3657 ATGAGGCCGGTTTTCGTTGGGAACTTCGAGTACGATACCCGTCAGTCAGAGCTTGAACGCTTGTTCGCCAAGTATGGCAGGATTGAGCGCGTCGACATGAAATCTGGTTTTGCTTTTGTCTACTTTGAGGATGAGCGAGATGCTGAAGATGCAATTCGTGCACTTGACAATTTTCCATTTGGTTATGAGAAGCGAACATTGTCTGTGGAGTGGGCTAGGGGTGAACGTGGCCGCCATCGTGATGGATCAAGGGCAAACCAGAGGCCCACAAAAACCCTGTTTGTGATTAATTTTGACCCAATTCGTACCAGAGTTCGTGATATAGAAAGACACTTTGAACCTTATGGGAAAGTTCTTCATGTTCGAATTCGTCGTAACTTTGCATTTGTACAGTTTGAAACACAAGAAGATGCTACTAAAGCTCTTGAGTGTACACATATGAGTAAAATACTGGACAGGGTGGTGTCTGTTGAGTATGCACTGAGGGATGATGATGAAAAGGGTGACAGGTATTATGACAGTCCTAGAAGAGGGGGTTATGGTAGATCACCCAGTCCAGTTTATAGGAGGCGATCAAGTCCTGACTACGGACGTCCACGCAGCCCTGTGTATGATAGGTACAATGGACCAGCCTATGACAGGCGCAAGAGCTCCGATTATGTTAGGCCAAGGAGCCCCGATTATAGCGGTAGGCACAGGAGTCCTGAGTATAGCAGACATCGCAGTCGTTCACCAATTCGGAGGTCAAGAACTTAA 756 0.4669 MRPVFVGNFEYDTRQSELERLFAKYGRIERVDMKSGFAFVYFEDERDAEDAIRALDNFPFGYEKRTLSVEWARGERGRHRDGSRANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLHVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDDEKGDRYYDSPRRGGYGRSPSPVYRRRSSPDYGRPRSPVYDRYNGPAYDRRKSSDYVRPRSPDYSGRHRSPEYSRHRSRSPIRRSRT* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3657 251 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 60 IPR000504 GO:0003723
Dod01g3657 251 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 155 IPR000504 GO:0003723
Dod01g3657 251 Gene3D - 85 171 IPR012677 -
Dod01g3657 251 SUPERFAMILY RNA-binding domain, RBD 2 165 IPR035979 GO:0003676
Dod01g3657 251 Gene3D - 1 84 IPR012677 -
Dod01g3657 251 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 162 IPR000504 GO:0003723
Dod01g3657 251 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED 4 224 IPR029537 GO:0000398|GO:0005681
Dod01g3657 251 MobiDBLite consensus disorder prediction 166 251 - -
Dod01g3657 251 MobiDBLite consensus disorder prediction 209 242 - -
Dod01g3657 251 SMART rrm1_1 92 158 IPR000504 GO:0003723
Dod01g3657 251 SMART rrm1_1 3 70 IPR000504 GO:0003723
Dod01g3657 251 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Dod01g3657 251 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3657 Dod-Chr1 77956420 77959729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3657 4 167 Eukaryotic Initiation Factors Gene Family AT1G49760 24.865 3.04e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3657 K12893 - mnt:21406229 414.075