Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3638 ATGGCACATCCGGAGTGTAATCTCAGGGGCCTCGCCACTCGTCAAGCCGAAACAGGTGGGGGAGATGACGACCTGTACACACAGCTATGGAAGTTGTGTGCAGGGCCTTTGGTGGATGTTCCTCGTGCTGGAGAGAGGGTGTACTACTTCCCTCAAGGTCATATGGAACAATTGCAAGCATCAACGAATCAGGAGCTCAATCAGGAATTGAGCCAGCAAATTCCTCACTTCAATCTCCCATCCCAGATTCTGTGCCGCGTTGTTCACATTCAGTTGCTGGCGGAACAAGAAAGTGATGAAGTTTATGCCCGCATCACTTTGCTCCCAGAACCGGATCAAAATGAGCCTGCAAATCCTGATCCAAGTCCCCTCGAGACCCAAAAACAGACGTTTCACTCCTTTAGCAAGATATTAACTGCCTCTGATACTAGCACACATGGAGGATTTTCAGTTCTCCGCAGGCATGCGACCGAGTGCTTACCTCAACTGGACATGACCCAATCTACCCCAACCCAGGAATTGGTAGCCAAGGATCTTCATGGGTTTGAGTGGAAGTTTAAGCACATATTCAGAGGTCAACCTAGGAGGCACTTGCTCACAACTGGCTGGAGTACGTTTGTCACGTCCAAACGATTGGTTGCCGGAGATGCTTTTGTGTTTTTAAGGGGAGAGAACGGGGAACTGAGAGTTGGTGTTAGGCGTCTTGCACGGCAACAAAGTCCAATGCCTTCATCTGTGATATCAAGCCAGAGTATGCATCTTGGAGTTCTGGCCACTGCGTCCCATGCTGTTTTGACTCGTACCTTGTTCGTGGTTTATTACAAACCAAGGACTACCCAGTTCATTATTGGCCTCAATAAGTATCTGGAGGCTGTCGACCATAAGTTCTCAGTTGGTATGCGTTTCAAGATGAGATTTGAGGTGGAAGACTCACCTGAGAGAAGGTTTTCTGGTACTATTGTTGGGGTTGGGGATGTATCTCCAGGATGGTCAAATTCTCAGTGGCGTTCATTGAAGGTTCAATGGGATGAACCAGCAACTATTCCAAGGCCAGAGAGGGTTTCTTCTTGGGAGATAGAGCCGTTTGTAGCTTCTGCTGCTTTAAATGTCACCCAGCCAGTGATGAAGAGTAAAAGGTCCAGGCCTGCTGATGTTCCATCATCTGGTAGGAGAGCCTTTTGA 1182 0.4839 MAHPECNLRGLATRQAETGGGDDDLYTQLWKLCAGPLVDVPRAGERVYYFPQGHMEQLQASTNQELNQELSQQIPHFNLPSQILCRVVHIQLLAEQESDEVYARITLLPEPDQNEPANPDPSPLETQKQTFHSFSKILTASDTSTHGGFSVLRRHATECLPQLDMTQSTPTQELVAKDLHGFEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGENGELRVGVRRLARQQSPMPSSVISSQSMHLGVLATASHAVLTRTLFVVYYKPRTTQFIIGLNKYLEAVDHKFSVGMRFKMRFEVEDSPERRFSGTIVGVGDVSPGWSNSQWRSLKVQWDEPATIPRPERVSSWEIEPFVASAALNVTQPVMKSKRSRPADVPSSGRRAF* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3638 393 SMART B3_2 134 236 IPR003340 GO:0003677
Dod01g3638 393 Gene3D - 131 235 IPR015300 -
Dod01g3638 393 PANTHER AUXIN RESPONSE FACTOR 11 10 388 - -
Dod01g3638 393 Pfam B3 DNA binding domain 134 234 IPR003340 GO:0003677
Dod01g3638 393 Pfam Auxin response factor 260 339 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dod01g3638 393 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 388 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dod01g3638 393 ProSiteProfiles B3 DNA-binding domain profile. 134 236 IPR003340 GO:0003677
Dod01g3638 393 CDD B3_DNA 132 234 IPR003340 GO:0003677
Dod01g3638 393 Gene3D - 295 367 - -
Dod01g3638 393 SUPERFAMILY DNA-binding pseudobarrel domain 123 263 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3638 Dod-Chr1 77770819 77773556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3638 19 382 B3 DNA Binding Superfamily AT2G46530 72.055 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dod01g3638 B3 4.5e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3638 K14486 - gmx:100790981 646.736