Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3631 ATGGAATCGAGTAGCATTGAGAGCACTATATTGTCCTTGAGTATGATGGAAGAGGATGAACATCCCCATCAGTTCTCTTCAATCTCCAAGCTGCACAACAATGGACCCACCACTACAAGTGTCCATGACCTTCTTGAATGCCCCGTTTGCACCAATTCAATGTACCCTCCAATCCATCAGTGCCACAATGGGCATACCCTTTGTTCAACTTGTAAGACAAAGGTACACAACCGGTGCCCAACTTGCAGACAGGAACTGGGTGATATAAGGTGTCTGGCATTGGAGAAGATAGCTGAATCACTTGAACTGCCTTGCAGATACATCTCTCTTGGGTGTCCAGAGATATTTCCCTATTATAGCAAACTCAAACATGAGGCCATTTGTAACTTCAGACCATACAACTGTCCTTACGCAGGGTCAGACTGCTCTTTTGTTGGGGATATTCCATACCTTGTTGCTCATTTAAGGGATGACCACAGGGTTGATATGCACTCTGGATGCACTTTCAACCATCGCTATGTCAAGTCTAATCCCATGGAAGTAGAAAATGCTACCTGGATGCTTACAGTATTCCACTGCTTTGGTCAGTATTTTTGTCTCCATTTTGAAGCCTTTCAGCTTGGTATGGCCCCAGTTTATATGGCGTTCCTCCGTTTCATGGGTGATGAAAGAGAGGCCCGGAACTACAGCTACAGCCTGGAGGTGGGCGGAAATGGGCGCAAACTAACCTTTGAGGGGAGTCCCAGAAGCATCAGAGACAGCCATAAGAAAGTCAGAGACAGTCATGATGGCCTCATTATATACCGTCACATGGCGCTCTTCTTCTCAGGTGGGGATAGGAAAGAGTTGAAGCTACGAGTGACTGGAAGGATATGGAAAGAGCAGCAAAACCCTGAAGGTGGGGTGTGCATACCCAACCAGTGTGCCTAG 930 0.4677 MESSSIESTILSLSMMEEDEHPHQFSSISKLHNNGPTTTSVHDLLECPVCTNSMYPPIHQCHNGHTLCSTCKTKVHNRCPTCRQELGDIRCLALEKIAESLELPCRYISLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSDCSFVGDIPYLVAHLRDDHRVDMHSGCTFNHRYVKSNPMEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEREARNYSYSLEVGGNGRKLTFEGSPRSIRDSHKKVRDSHDGLIIYRHMALFFSGGDRKELKLRVTGRIWKEQQNPEGGVCIPNQCA* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3631 309 SUPERFAMILY RING/U-box 34 86 - -
Dod01g3631 309 ProSiteProfiles Zinc finger RING-type profile. 47 83 IPR001841 -
Dod01g3631 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 99 IPR013083 -
Dod01g3631 309 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 162 288 IPR008974 GO:0005515
Dod01g3631 309 CDD Sina 161 289 - -
Dod01g3631 309 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 301 - -
Dod01g3631 309 ProSiteProfiles Zinc finger SIAH-type profile. 100 160 IPR013010 GO:0008270
Dod01g3631 309 CDD RING-HC_SIAHs 45 83 - -
Dod01g3631 309 Pfam Seven in absentia protein family 89 288 IPR018121 GO:0005737|GO:0006511|GO:0007275
Dod01g3631 309 PANTHER UBIQUITIN LIGASE SINAT3 1 301 - -
Dod01g3631 309 SUPERFAMILY TRAF domain-like 100 292 - -
Dod01g3631 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 155 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3631 Dod-Chr1 77636032 77639581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3631 11 295 C3H Transcription Factor Family AT2G41980 72.125 5.85e-158 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3631 K04506 - gmx:100792687 634.795