Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3625 ATGATAATTAAGCGCACTCTGAAGACTGGAATGCAGAACCTGAAACGCCGCAAGCTACAAGAACCCAATTATTCCCACGAGCAGAACAAGCGCTGCAAGCTCAATGAGGAGTTTTACTCTCGTGACATGTCACGTGATGCCCAACACTGCTTGAGCTTCGTTGATGCCACAATAACCACAACAAAGCCGCCACTAGACCCTGTCTCAGAGTCGGCAGCGCTTCTTCAACCTCCTCCTCCTCCATTGGTGCGGTCATCGCGAGGTCGACCCAGGATTCTTCCATCCAGGTTCAACGACTCTGTTCTCGACACGTGGCAAAACGGTGGAGCAGTCCAAATACACAACGCCAACAAAAGACACTCCCGGTATGAAGAACATGATAGTAGTAATAATGCTTTTCAAGATAGTGACATCATGGTGGGGTTTGTAAAACAGGGGAAGAAGGTGAATAAATGCGTCGAAACAGAATCTAGTGGCTTTTTAGGTTTCGATGATTTGGACTACGATAAGACTGTTAGTACGTTGGTGACTGTTACAAAGAGTGTTAATGGGAGCCGTTCATCACTGGTTAAAAAAGAGATTGATAATGCTTCTGGGATTGGCTTTGAGGGTGTGATCCAAAAGCCTAACGATAGGAATGGTAGAAAGAGGAGAGACATGTACAAACCAGAGGATTTTGCTTTGGGTGATATCGTTTGGGCGAAATGTGGGAAGCGGTACCCTGCTTGGCCTGCTGTGGTCATTGATCCCATCTTGCAGGCTCCCAAATCAGTCCTCAGCTGCTGTGTTCCTGGCGCAATTTGCGTTATGTTCTTTGGTTATTCGAAAAACGGAAAGCAAAGGGACTATGCGTGGGCGAGGCAGGGAACGATATTCCCCTTCTTGGAATTCATGGATAGATTCCAGGGGCAGACCCAGTTGTACAAGAGCAAACCAAGTGACTTTCAGATGGCAATGGAGGAAGCGATGTTGGCAGAAGATGGCATTCTGGACACGCACGTGGGACCTGAGCAAATTATCGATGTTGAAGCTAATCCCAGTGGACATATGGAGGGTACAGGTTCCTGTGCTCAGCAGGATCAATACCGCCAAGATCAGGATGCAATATCTTGTGCTGGCTGTGGTTTGATGTTGCCGCATAAAACCAAGAAGAAGATTAAGGATTCAAGTGGTGCACCTCTACTTTATTGTAAAAACTGTGCAAAGTTACAAAAATCCAAACAATGTTGTGGCATTTGTAAAAAGATTTGGCACCATTCAGATGGTGGCAATTGGGTATGCTGTGATGGTTGTAGTGTTTGGGTGCATGCTGAATGTGATAAAATTTCCGGCAAACTTTTCAAGGATTTGGAAAATATGGATTACTACTGTCCAGACTGCAAGGGAAAACTCAATTCTAATTATCTGCATCACAAATATACAAGTCAAACAATAAATCAACAGAGAATTATCAAAAACCTGTGA 1464 0.4488 MIIKRTLKTGMQNLKRRKLQEPNYSHEQNKRCKLNEEFYSRDMSRDAQHCLSFVDATITTTKPPLDPVSESAALLQPPPPPLVRSSRGRPRILPSRFNDSVLDTWQNGGAVQIHNANKRHSRYEEHDSSNNAFQDSDIMVGFVKQGKKVNKCVETESSGFLGFDDLDYDKTVSTLVTVTKSVNGSRSSLVKKEIDNASGIGFEGVIQKPNDRNGRKRRDMYKPEDFALGDIVWAKCGKRYPAWPAVVIDPILQAPKSVLSCCVPGAICVMFFGYSKNGKQRDYAWARQGTIFPFLEFMDRFQGQTQLYKSKPSDFQMAMEEAMLAEDGILDTHVGPEQIIDVEANPSGHMEGTGSCAQQDQYRQDQDAISCAGCGLMLPHKTKKKIKDSSGAPLLYCKNCAKLQKSKQCCGICKKIWHHSDGGNWVCCDGCSVWVHAECDKISGKLFKDLENMDYYCPDCKGKLNSNYLHHKYTSQTINQQRIIKNL* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3625 487 CDD PHD_TCF19_like 409 460 - -
Dod01g3625 487 Pfam PHD-finger 410 462 IPR019787 -
Dod01g3625 487 PANTHER PHD FINGER PROTEINS 1 469 - -
Dod01g3625 487 Gene3D - 218 328 - -
Dod01g3625 487 ProSiteProfiles Zinc finger PHD-type profile. 407 463 IPR019787 -
Dod01g3625 487 SUPERFAMILY Tudor/PWWP/MBT 219 327 - -
Dod01g3625 487 SMART PWWP_4 226 295 IPR000313 -
Dod01g3625 487 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 1 469 - -
Dod01g3625 487 SMART PHD_3 409 461 IPR001965 -
Dod01g3625 487 Pfam PWWP domain 229 325 IPR000313 -
Dod01g3625 487 MobiDBLite consensus disorder prediction 62 90 - -
Dod01g3625 487 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 401 462 IPR013083 -
Dod01g3625 487 SUPERFAMILY FYVE/PHD zinc finger 407 469 IPR011011 -
Dod01g3625 487 ProSiteProfiles PWWP domain profile. 228 297 IPR000313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3625 Dod-Chr1 77571756 77574399 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3625 350 434 EF-hand Containing Proteins AT5G28340 49.412 7.72e-18 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dod01g3625 PWWP 1.9e-16 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3625 - - gmx:100793624 485.723