Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3623 ATGATGGAAATGGATCACAGCAACAATCACAGCATCAACAAGATGTACAACCTCTTCGTGAAGCACTTGGACGGGAAAACCCTAACCCTAGTGTTCCCCTCCCCGACCCTCTTCGCCAACTCCATTAAGGAACGCCTCTTCGACCTCACGGGGATCCCGCCGCACCACCAGCGCCTCGTCACCGGCTGCCGCCACCTCAACGACGACGGATCCGCCATCTCGTGCTCGCGTGATGGCGGCAACATCTTCCCGACGGTGCGGCTCCTTTTGCGGCTGAAGGGCGGTAAGGGTGGGTTCGGGTCTCTGCTGAGAGGCGCGGCGACGAAGGCAGGGCAGAAGAAGATGAACAACTTCGACGCGTGCAGGGACATGAGTGGTCGGAGGCTGAGGCACGTGAACGCCGAGAAGAGGCTGGAGGAGTGGAAGGCTTCGGAGGAGGAGCGGAGGCTGGAGAAGGTGGCGGAGGAGTTCCTGAAGAAGCAGATGAAGAAGGGCAAGAAGGGTGCCGGCGATGGGGAGGCACACAAGTATGTTGCCAAGTATAGGGAGGAGTCTGAGCGGTGTGTTGCTGATGTTGCTGAGTCCGTGAAGGAGGCTCTGATGTCTCTCAATGGTAAGAGAAAGGGTTCTGATGCTGCACAGGATAGAGCTGATGCCAAGAAGTTGAAGATTTGGAAGGGGAAGAGAAAATTGAATGAAAGTGATAGTGATTATTCTGATGAGGATGAGAGTGATGATGAAGGGGAAAATCAGGAGTCCACTGTGTTGAATAGCCAGAATGAGTCAGACTCAAATAAGGCTGAAGGCAGTTCAGGTTCAGTGACTGGTGGGAAACAGGATGGAAACTCTTCTGGTGCTGGCTCCTGTGAAAGTGGATCTGAAGAGGAGAAAGAATCACTAATAGAAGGCAAAGTGGAAGCTGTTGGATCCCCAAATTGTGAAACTACTCAGGCCAAAATTAGTGATGCTGGTGGGCTTGTGATGCATGATGAGATGATGGAGGCTACTGCTATGCCTTGTTCAGAGTCGGTAGTTTCTGGAGTTAGTGCCAAAACTAATGGATATCAGGATTGTGATGGAGCTGTTAGTCAAGCCTCAGGTATTGTGTGCTCAGAAAATGGGGCTGGTGCAAGCAAATTTAATGATATGGAGATTGATGGATCTCTTGACCATAAAGCATCTGTCCATGAAGAAAGCTCACCTGGCACTAGTGTTCCAGCATTGGAGGAACCTCTGAATTTTGATGCTTTTAATTCAGCTGTGGAGCTTGAGGTTCTTGGCATGGAAAGGTTAAAATCTGAACTGCAATCACGTGGGTTAAAATGTGGAGGTACTTTGCAGGAACGTGCTGCCAGGCTTTTTCTTTTGAAATCGACTCCACTGGAAAAACTTCCGAAGAAGTTGCTTGCCAAGAAATGA 1419 0.5039 MMEMDHSNNHSINKMYNLFVKHLDGKTLTLVFPSPTLFANSIKERLFDLTGIPPHHQRLVTGCRHLNDDGSAISCSRDGGNIFPTVRLLLRLKGGKGGFGSLLRGAATKAGQKKMNNFDACRDMSGRRLRHVNAEKRLEEWKASEEERRLEKVAEEFLKKQMKKGKKGAGDGEAHKYVAKYREESERCVADVAESVKEALMSLNGKRKGSDAAQDRADAKKLKIWKGKRKLNESDSDYSDEDESDDEGENQESTVLNSQNESDSNKAEGSSGSVTGGKQDGNSSGAGSCESGSEEEKESLIEGKVEAVGSPNCETTQAKISDAGGLVMHDEMMEATAMPCSESVVSGVSAKTNGYQDCDGAVSQASGIVCSENGAGASKFNDMEIDGSLDHKASVHEESSPGTSVPALEEPLNFDAFNSAVELEVLGMERLKSELQSRGLKCGGTLQERAARLFLLKSTPLEKLPKKLLAKK* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3623 472 Pfam Silencing defective 2 N-terminal ubiquitin domain 17 164 IPR024974 -
Dod01g3623 472 MobiDBLite consensus disorder prediction 230 301 - -
Dod01g3623 472 Gene3D - 7 114 - -
Dod01g3623 472 ProSiteProfiles Ubiquitin domain profile. 16 95 IPR000626 GO:0005515
Dod01g3623 472 PANTHER REPLICATION STRESS RESPONSE REGULATOR SDE2 15 471 - -
Dod01g3623 472 SUPERFAMILY Ubiquitin-like 10 95 IPR029071 -
Dod01g3623 472 MobiDBLite consensus disorder prediction 251 290 - -
Dod01g3623 472 PANTHER SPLICING FACTOR SF3A-RELATED 15 471 - -
Dod01g3623 472 Pfam Replication stress response SDE2 C-terminal 406 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3623 Dod-Chr1 77563533 77566412 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3623 351 471 C2H2 Transcription Factor Family AT5G06160 36.364 3.78e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3623 K25059 - gmx:100781694 516.924