Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dod01g3619 | GTGTGTAGTTTCTTCAGGAAACCAGTTAATAAGAAGAATATTAGGAAACGTGCAATTGATAATGATGATGATGATGATGATGATGAGGATCCAAAGAATGAAAACTCTTTGTTACATACTCAGAAGAAGACTTCAAAGTCTGACAATAAGTTGTATTTTTCCACCGGCTCCTCAAAAAGCTCTGCTTCCGCTGAACCAAGTGAAGAATCCGGTAAACCTGTCTTTCAGTTTGAGTCTTCGAAAGAGATTCAAGTTCAACATGATAGCAAAGCAACGGCGATTCTAGAGACGGAGACTGATTTTTCGAGAGATGCCCGTGCTATCCGTGAGAGAGCTCTTAAGCAAGCAGCAGAGAGTTTGAAGGGAAAAGCCACAGGTTCTGAGGATGAAAAGTTGTATAAGGGCATTAATAGTTACAAAGATTACAAGGCTGGCTTTCGCAGAGAGCAAACAATTGCTAGTGAAAAAGCTGGTGGGGCACATGGTCCTCTCAGGGCTTCTGCTCATATAAGAGTTTCAGCAAGATTTGATTATCAGCCTGATATATGTAAAGATTACAAGGAGACTGGTTACTGCGGGTATGGTGATGCGTGTAAATTTATGCATGATCGAGGGGATTACAAGTCTGGATGGCAGTTGGAGAAGGAATGGGAAGAAGCTGAGAAAGCAAGGAAGATGAGATTGGCTGCAGGTGATGATGCCGATGAGGAAGGTGGTGATTTGACTGATGAAGATGATGATGATTCATTACCATTTGCATGTTTCATTTGTAGGAAGCCTTTTGTGGATCCTGTTGTAACCAAGTGCAAGCACTACTTCTGCGAGCATTGTGCATTGAAGCATCATGCAAAGAATAAGAAGTGTTTTGTCTGCAACCAACCAACTCTTGGCATTTTTAATGTTGCTCATGAGATACGTAGGAAGATAGCTGAGGATAAA | 939 | 0.4153 | VCSFFRKPVNKKNIRKRAIDNDDDDDDDEDPKNENSLLHTQKKTSKSDNKLYFSTGSSKSSASAEPSEESGKPVFQFESSKEIQVQHDSKATAILETETDFSRDARAIRERALKQAAESLKGKATGSEDEKLYKGINSYKDYKAGFRREQTIASEKAGGAHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEAEKARKMRLAAGDDADEEGGDLTDEDDDDSLPFACFICRKPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNVAHEIRRKIAEDK | 313 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dod01g3619 | 313 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 178 | 203 | IPR000571 | GO:0046872 | |
| Dod01g3619 | 313 | PANTHER | ZINC FINGER PROTEIN 183 | 1 | 312 | IPR039971 | - | |
| Dod01g3619 | 313 | MobiDBLite | consensus disorder prediction | 17 | 91 | - | - | |
| Dod01g3619 | 313 | SMART | ring_2 | 254 | 291 | IPR001841 | - | |
| Dod01g3619 | 313 | MobiDBLite | consensus disorder prediction | 32 | 46 | - | - | |
| Dod01g3619 | 313 | CDD | RING-HC_RNF113A_B | 252 | 292 | - | - | |
| Dod01g3619 | 313 | ProSiteProfiles | Zinc finger C3H1-type profile. | 177 | 205 | IPR000571 | GO:0046872 | |
| Dod01g3619 | 313 | ProSitePatterns | Zinc finger RING-type signature. | 269 | 278 | IPR017907 | - | |
| Dod01g3619 | 313 | Gene3D | - | 175 | 209 | - | - | |
| Dod01g3619 | 313 | Pfam | Zinc finger, C3HC4 type (RING finger) | 253 | 295 | - | - | |
| Dod01g3619 | 313 | SUPERFAMILY | CCCH zinc finger | 176 | 208 | IPR036855 | GO:0046872 | |
| Dod01g3619 | 313 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE | 1 | 312 | - | - | |
| Dod01g3619 | 313 | SUPERFAMILY | RING/U-box | 253 | 296 | - | - | |
| Dod01g3619 | 313 | SMART | c3hfinal6 | 177 | 204 | IPR000571 | GO:0046872 | |
| Dod01g3619 | 313 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 252 | 311 | IPR013083 | - | |
| Dod01g3619 | 313 | MobiDBLite | consensus disorder prediction | 47 | 91 | - | - | |
| Dod01g3619 | 313 | ProSiteProfiles | Zinc finger RING-type profile. | 254 | 292 | IPR001841 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dod01g3619 | 1 | 313 | C2H2 Transcription Factor Family | AT1G01350 | 69.329 | 7.13e-162 | 453 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C3H | Dod01g3619 | zf-C3HC4_3 | 8e-09 | CL0229 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Dod01g3619 | K13127 | - | gmx:100787434 | 531.946 |