Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3591 ATGAGCAGGAAAATTGTCACCAACAAAGTCCTCAAACCTGGTTCCTTGAATCCAGCACCAAGCGTGGTTCGGATTTCAGTGATGGATCCATATGCCACCGACTCTTCCACTGATGAAGAATATGAGAATGAAGGCCTCACTCATCATCAGAGTACCACCAAAGTGAAGAAGATTGTCAATGAGATCAGGATTGTAGATCGTTCAATTGACATAGTGAACAAGAGGGTGTCACTGAAGCAAAGGTCTAAACAACAGGATGGAAGAAGGGTAGCCACAAAGACCGAAGAAGAGGGTGCCGGAACTGGGAGAAAGCTTCGTGGGGTTCGGCAAAGGAAGTGGGGGAGATGGGCTGCGGAAATCAGAGATCCTGTGAAGCGTAGCAGAGTGTGGTTGGGTACCTTTGACACTGCAGAAGAGGCTGCTATCGTTTATGACAGAGAGGCTATTCGCCTCAGAGGCTCTAATGCTCAAACGAATTTCTTGAAGCCCCCAGAGAAGCAGCACACATTCACAAGTGAAGTTTTTGACATGGGTATTGGCACGAGCATTATGTTTGAAGGCAGTGTAATAAAAGATGAGTGTATTGAGGATGTTAATTGCGGCTATAATTCAGGTACAGAGTCTCATGATCTGCCTTCACCCACTTCTGTTCTTGTATTTGAGTCTAATGAATCTGGCGCTAAGGAGATACTAGCAGAGAGTGCACCCATGGAAGAGGAGTGGGAGTTCAGACCCGAATCATTTTTGCAACATAGATCATTCTTAGACTTGTCATCCATTGATTGTTGTTTGGATTTTGAAACTCCTCCCCCAATATTTCTTGATGAAAGGTGTGTACCCCATTCCATCTCCAATGAAAATTTCAGTGATGCTGCCTTTAGTATTTACGAGGATTTTGAGTCGTGTAATTTGGATGTTGACAATTACTTCTGCAATAATGAGACATCAGATTGA 954 0.4403 MSRKIVTNKVLKPGSLNPAPSVVRISVMDPYATDSSTDEEYENEGLTHHQSTTKVKKIVNEIRIVDRSIDIVNKRVSLKQRSKQQDGRRVATKTEEEGAGTGRKLRGVRQRKWGRWAAEIRDPVKRSRVWLGTFDTAEEAAIVYDREAIRLRGSNAQTNFLKPPEKQHTFTSEVFDMGIGTSIMFEGSVIKDECIEDVNCGYNSGTESHDLPSPTSVLVFESNESGAKEILAESAPMEEEWEFRPESFLQHRSFLDLSSIDCCLDFETPPPIFLDERCVPHSISNENFSDAAFSIYEDFESCNLDVDNYFCNNETSD* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3591 317 MobiDBLite consensus disorder prediction 78 104 - -
Dod01g3591 317 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 3 311 - -
Dod01g3591 317 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 311 - -
Dod01g3591 317 SUPERFAMILY DNA-binding domain 104 160 IPR016177 GO:0003677
Dod01g3591 317 MobiDBLite consensus disorder prediction 78 105 - -
Dod01g3591 317 SMART rav1_2 104 167 IPR001471 GO:0003700|GO:0006355
Dod01g3591 317 ProSiteProfiles AP2/ERF domain profile. 104 161 IPR001471 GO:0003700|GO:0006355
Dod01g3591 317 Pfam AP2 domain 104 153 IPR001471 GO:0003700|GO:0006355
Dod01g3591 317 PRINTS Ethylene responsive element binding protein signature 105 116 IPR001471 GO:0003700|GO:0006355
Dod01g3591 317 PRINTS Ethylene responsive element binding protein signature 127 143 IPR001471 GO:0003700|GO:0006355
Dod01g3591 317 CDD AP2 104 160 IPR001471 GO:0003700|GO:0006355
Dod01g3591 317 Gene3D AP2/ERF domain 104 162 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3591 Dod-Chr1 77279259 77280269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3591 20 310 AP2-EREBP Transcription Factor Family AT2G46310 38.312 1.99e-40 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Dod01g3591 AP2 4.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3591 - - adu:107491972 254.988