Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3565 ATGGCAAGGAGAGAGAGAGGGGTATCATCATGGGATGGAAGTGGGAGGGCGGCGGTTGCGGAATTGAAGGAGAAGCTGCGTGGATTGGTGAAGGCCATCGTGGAGGACGACGACTTCTCCACGCGCACCGCCGACGACGCTATTGCCACTCTCTCCGCTCTCAGGGATTTCAAGTCTCCTCGCACTCCTCGCAGCCCCCTTTCCCTTTCCCACAAACTGGACGACTTCCCTGTCCCTCCCGATTTCCGATGCCCCATTTCCACCGAGTTGATGACCGATCCTGTTGTCTTGGCCACCGGACAGACATATGATCGGGCCTACATCCAGAGGTGGTTGAATGAAGGCCACAGAACATGCCCTCAAACCCAGCAGGTCCTCTCCCACACCATCCTTACTCCTAATTACTTGGTTCGAGACATGATTGCACAGTGGTGTAAGGAGCATGGAATTGAGATGCCAAAGCCTGTTCATGACATCAATGAAGCAGTCACTGATGCAGACAGAGACTGCTTGGATTCGTTGCTTCGAAAGCTGTCACTGTCTGTTTCTGATCAGAAAGAAGCTGCCAAAGAGCTTCGGCTGTTAACTAAGCGAATGCCTTCGTTTAGAACCCTTTTTGGGGAGTCCAGTGATGTGATTCCACAGTTGCTCAGTCCATTATCACCCGATACACCTAATGTTCACCCTGATCTCCATGAAGACCTGATTACAACTATTCTAAATCTCTCAATTCATGATGATAATAAGAAAGCATTTGGAGAGGATCCGAGTGTCATTTCTCAGCTCATTGATGCTTTGAAATCTGGAACCATTCAAACAAGAAGCAATGCTGCGGCAGCTATTTTCACATTGTCTGCTCTCGATTCCAACAAGCACATCATTGGAAAGTCTGGAGCTATCAAACATTTGCTTGAGCTTTTGGAGGAGGGACAGCCATTGGCCATGAAAGATGCTGCTTCGGCCATATTCAACCTATGTCTTGTGCACGAGAATAAAGGGAGAACTGTGCGAGAAGGGGCAGTCCAGGTTATTCTGAACAAGATCATGGATCACATTCTAGTTGATGAGTTGTTGTCTATATTGGCACTCCTTTCCAGCCATCCCAAGGCCGTGGAAGAAATGGGTGATCTAGGTGCTGTCCCCTTCTTGTTGGATATTATAAGGGAGGGCACTTCAGAACGAACCAAGGAAAATTGCGTCGCAATCCTGTATACAATCTGTTACAGTGATAGAACAAAGTTGAAGGAAATTAGAGAAGAAGAAAAGGCCAACAGTACCCTGTCCAAACTAGCACAATGTGGAACTTCAAGGGCGAAAAGGAAGGCTAATGGGATTCTTGAGAGGCTCAATCGATCTCCCTCCTTAACACACACTGCTTAG 1380 0.4797 MARRERGVSSWDGSGRAAVAELKEKLRGLVKAIVEDDDFSTRTADDAIATLSALRDFKSPRTPRSPLSLSHKLDDFPVPPDFRCPISTELMTDPVVLATGQTYDRAYIQRWLNEGHRTCPQTQQVLSHTILTPNYLVRDMIAQWCKEHGIEMPKPVHDINEAVTDADRDCLDSLLRKLSLSVSDQKEAAKELRLLTKRMPSFRTLFGESSDVIPQLLSPLSPDTPNVHPDLHEDLITTILNLSIHDDNKKAFGEDPSVISQLIDALKSGTIQTRSNAAAAIFTLSALDSNKHIIGKSGAIKHLLELLEEGQPLAMKDAASAIFNLCLVHENKGRTVREGAVQVILNKIMDHILVDELLSILALLSSHPKAVEEMGDLGAVPFLLDIIREGTSERTKENCVAILYTICYSDRTKLKEIREEEKANSTLSKLAQCGTSRAKRKANGILERLNRSPSLTHTA* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3565 459 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 17 457 - -
Dod01g3565 459 SUPERFAMILY RING/U-box 73 155 - -
Dod01g3565 459 SMART Ubox_2 81 144 IPR003613 GO:0004842|GO:0016567
Dod01g3565 459 Gene3D - 206 352 IPR011989 -
Dod01g3565 459 SMART arm_5 367 408 IPR000225 GO:0005515
Dod01g3565 459 SMART arm_5 287 327 IPR000225 GO:0005515
Dod01g3565 459 SMART arm_5 245 286 IPR000225 GO:0005515
Dod01g3565 459 ProSiteProfiles U-box domain profile. 77 151 IPR003613 GO:0004842|GO:0016567
Dod01g3565 459 Pfam U-box domain 78 148 IPR003613 GO:0004842|GO:0016567
Dod01g3565 459 Gene3D - 353 453 IPR011989 -
Dod01g3565 459 PANTHER U BOX DOMAIN-CONTAINING 17 457 - -
Dod01g3565 459 SUPERFAMILY ARM repeat 181 450 IPR016024 -
Dod01g3565 459 CDD RING-Ubox_PUB 82 124 IPR045210 -
Dod01g3565 459 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 151 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3565 Dod-Chr1 77001923 77004729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3565 140 459 U-box Gene Family AT3G07360 58.537 1.02e-124 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3565 - - gmx:100806619 694.501