Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3556 ATGTTGAAGGTGTCTCGCGTGCTTTCTTCCAGCTCCAGGCATCGGTTACTGGAAGCGCTGTCGTTTAGGACAGCAGATGTTAGGGACTGTCTGCGGCATTGCCATGATTTTAGCCGTTCAGCTGCTGCCTTTTCCACTGCTTCAGATAATAAATATTCTGCTAAAGGATATACCTCCTCAAATCGTATATTTGCTCCTTATTCTGTTTACAAGGGCAAAGCTGCATTCTCTTTAAGCCCTTGTCTTCCAACTTTCACAAAGTTGGATTCTGGGGCTGTTGTAGTTGATCGTCGGGGTTCGATAATGATGATTTTCATGCATGCTATCGGGGAGCGCAAATATGACTGGGAGAAAAAACAGAGGTTTGCTCTCTCAGCAACTGAAGTTGGCTCTTTGATAACCATGGGGCCCCACGATTCCTGTGAATTCTTTCATGACCCCTCAATGTTATCAAGTAATGCTGGTCAAGTACGGAAGAGCTTATCAATTAAGCCACATGCAAACGGAAATGGCTACTTTGTGTCTTTGAATGTTGTCAACAACCTGTTGAATACAAAAGAATTCTTCAGTGTCCCTATCACAACTGCTGAGTTTGCTGTGATGAAGACAGCTTGCAGTTTTGCATTGCCACACATCATGGGTTGGGACCGCATGACTCATCAGCAGTCCAGTGGCATGATTGGCCTTCAACCGAAGGTGGACCAACAGGCTTTAGCCTTGGAGTGGGAAAAGTGA 735 0.4531 MLKVSRVLSSSSRHRLLEALSFRTADVRDCLRHCHDFSRSAAAFSTASDNKYSAKGYTSSNRIFAPYSVYKGKAAFSLSPCLPTFTKLDSGAVVVDRRGSIMMIFMHAIGERKYDWEKKQRFALSATEVGSLITMGPHDSCEFFHDPSMLSSNAGQVRKSLSIKPHANGNGYFVSLNVVNNLLNTKEFFSVPITTAEFAVMKTACSFALPHIMGWDRMTHQQSSGMIGLQPKVDQQALALEWEK* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3556 244 SUPERFAMILY ssDNA-binding transcriptional regulator domain 60 221 IPR009044 GO:0003677|GO:0006355
Dod01g3556 244 Gene3D Transcriptional Coactivator Pc4; Chain A 54 225 IPR009044 GO:0003677|GO:0006355
Dod01g3556 244 Pfam Whirly transcription factor 69 203 IPR013742 GO:0003697|GO:0006355|GO:0006952
Dod01g3556 244 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 1 244 IPR013742 GO:0003697|GO:0006355|GO:0006952
Dod01g3556 244 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 1 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3556 Dod-Chr1 76806219 76809345 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3556 43 244 Whirly Transcription Factor Family AT1G71260 59.906 1.42e-89 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Dod01g3556 Whirly 2e-54 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3556 - - var:108343725 330.487