Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3553 ATGGAACCTAATGACAACCAACTGGGCTCCTACTTTCACCACCACCAGCAGCAGGGTGGTGTGGCGGCGACGCCGACAAACGGGTTGTTAGGGAACGCGGATGGGTCCCAGTCGCACATGGTGTACCCTCACACTTCAACTGTGGCGTCAGCGGTGTCGTCGCAGCTGGTGGAGCCCGCCAAGAGGAAGAGAGGGCGGCCGCGCAAGTACGGCACTCCCGAGCAGGCCCTCGCCGCCAAGAAGGCCGCCACTACGACGTCGTCTCAGCCCTTCTCTCCTTCTCCCTCCAACAAGAAGACCCTTCCTCCTCCTCTCCACCACCACCACCACCACCACCATGCCTTGGGTGCTGCTGCTCCTTCTCCTTCTTCCTCCTCCTACTCTTCCAAGAAATCTAGCTCCTTTGCTCTAGGCAATGCAGGACAAGGCTTCACACCACATGTCATTTCTGTAGCTGCTGGCGAGGATGTTGGCCAGAAAATTATGTTATTTATGCAACAAAGCAAGCGTGAGATGTGCATTCTCTCCGCTTCTGGTTCCATATCTAATGCCTCTCTTCGTCAGCCAGCAACCTCAGGAGGCAACATTACATATGAGGGTCGGTTTGAGATTATTTCACTTACTGGTTCCTATGTCCGCAATGAATTCGGCGGTCGATCTGGTGGTCTCAGTGTATGCTTATCGAATACTGATGGACAAATTATAGGTGGTGGAGTAGGTGGACCCCTCAAAGCAGCTGGTCCAGTTCAGGTCATTGTTGGTACATTTTTTCTTGACACCAAGAAGGATACTGGTGCTGGTGTAAAAGGTGATGCCTCGGCTAGTAAGTTGCCATCACCAATTGGTGATTCAGTATCAAGTTTAGGTTTCCGCCAACCAGTTGACACATCGGGTGGGAATCCGATCCAGGGAAACGACGAGCATCAAGCTATGGGGGGAAGTCATTTCATGATCCAACAGCTTGGTTTGCACATGACGCCTCCCCGGTCCACAGACTGGGGGCACCATCCGGAGTCCAGAAATGCTGGCTATGAGCTGTCAGGTAGAACAGGTCATGGTCAGTCTCCTGAGAATGGGGGCTACGACCAGATCACTGATTGA 1101 0.5313 MEPNDNQLGSYFHHHQQQGGVAATPTNGLLGNADGSQSHMVYPHTSTVASAVSSQLVEPAKRKRGRPRKYGTPEQALAAKKAATTTSSQPFSPSPSNKKTLPPPLHHHHHHHHALGAAAPSPSSSSYSSKKSSSFALGNAGQGFTPHVISVAAGEDVGQKIMLFMQQSKREMCILSASGSISNASLRQPATSGGNITYEGRFEIISLTGSYVRNEFGGRSGGLSVCLSNTDGQIIGGGVGGPLKAAGPVQVIVGTFFLDTKKDTGAGVKGDASASKLPSPIGDSVSSLGFRQPVDTSGGNPIQGNDEHQAMGGSHFMIQQLGLHMTPPRSTDWGHHPESRNAGYELSGRTGHGQSPENGGYDQITD* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3553 366 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 359 IPR039605 GO:0003680
Dod01g3553 366 MobiDBLite consensus disorder prediction 267 309 - -
Dod01g3553 366 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 14 1 359 - -
Dod01g3553 366 MobiDBLite consensus disorder prediction 351 366 - -
Dod01g3553 366 MobiDBLite consensus disorder prediction 79 95 - -
Dod01g3553 366 CDD DUF296 145 256 IPR005175 -
Dod01g3553 366 ProSiteProfiles PPC domain profile profile. 140 281 IPR005175 -
Dod01g3553 366 SUPERFAMILY AF0104/ALDC/Ptd012-like 142 257 - -
Dod01g3553 366 MobiDBLite consensus disorder prediction 1 132 - -
Dod01g3553 366 MobiDBLite consensus disorder prediction 325 366 - -
Dod01g3553 366 MobiDBLite consensus disorder prediction 1 54 - -
Dod01g3553 366 MobiDBLite consensus disorder prediction 279 304 - -
Dod01g3553 366 Pfam Plants and Prokaryotes Conserved (PCC) domain 146 256 IPR005175 -
Dod01g3553 366 Gene3D - 146 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3553 Dod-Chr1 76786267 76790333 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3553 34 363 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 51.437 1.03e-88 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3553 - - adu:107491998 514.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3553 01 76786267 76790333 Dod01g3553 01 76786267 76790333 ECH