Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3550 ATGCAAGATATCAGAGGTGATCTGATCAAGATGTCAAATCCAAAAGTTTTCTTTGATATTGTAATTGGAAAGATGAAAGCTGGGCGAGTAGTAGTGGAGCTGTTTGCTAACGTAGCCCCAAAAACAGGTGAAAAATTTAAGGCTCTCTGTACTGGAGAAAAGGGGATTGAGAAATATGGGAAACCTTTGCATTTCAAAGGATCCGTATTTCGTCGAATTATTCCAGGGTTTATGTGTCAAGGAGGAGATTTGACGAGAGGGAATGGGACAAGAGGAGAGTCAATTTACGGATCTAAACTTCCAGATGAGAATTTTAAGATGAAGCATACAGGGCCTGGTATTCTTTCCATGGCAAATGCTGGGCCAAATACAAATGGTTCACAGTTCTTTATATGTACTACCAAGACTGAATGGCTTGATGGAAAGCACGTTGTATTTGGAAAAGTCTGTTAA 453 0.3974 MQDIRGDLIKMSNPKVFFDIVIGKMKAGRVVVELFANVAPKTGEKFKALCTGEKGIEKYGKPLHFKGSVFRRIIPGFMCQGGDLTRGNGTRGESIYGSKLPDENFKMKHTGPGILSMANAGPNTNGSQFFICTTKTEWLDGKHVVFGKVC* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3550 150 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 22 149 IPR002130 GO:0000413|GO:0003755
Dod01g3550 150 Gene3D - 5 150 IPR029000 -
Dod01g3550 150 SUPERFAMILY Cyclophilin-like 9 149 IPR029000 -
Dod01g3550 150 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 17 150 IPR002130 GO:0000413|GO:0003755
Dod01g3550 150 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP63 11 149 - -
Dod01g3550 150 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 128 140 IPR002130 GO:0000413|GO:0003755
Dod01g3550 150 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 34 49 IPR002130 GO:0000413|GO:0003755
Dod01g3550 150 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 70 82 IPR002130 GO:0000413|GO:0003755
Dod01g3550 150 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 128 IPR002130 GO:0000413|GO:0003755
Dod01g3550 150 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 141 150 IPR002130 GO:0000413|GO:0003755
Dod01g3550 150 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 11 149 - -
Dod01g3550 150 PIRSF Peptidylpro_ismrse 5 150 IPR024936 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3550 Dod-Chr1 76736770 76737796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3550 28 149 U-box Gene Family AT5G67530 45.528 2.22e-24 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3550 K01802 - csin:114286422 248.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3550 01 76736770 76737796 Dod01g3550 01 76736770 76737796 ECH