Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3546 ATGGACTCATCATTCTATGCTCCATACCCAAACTTTGAATTATTCCCTACTAGTACTGATGAGTCATGTTCTTCCTTCATCACATCATCACAAAAAAATAATTACCACCAACACCACCCCCTTCCCTTCAATGAGAATGACTCCCAGGAAATGCTTCTTTACGAAGTTCTGGCACAGGCTGCAGCGGGTGCAGACTCTGTTGAAGCAGCAACAGCAACAACAACAACACCACCTCCTTATTCACGAGATGAAGAGGTGAGCTCAAAGAGCACGATGGCACAAGAGATTGCTTCTTACAGAGGGGTGAGAAGGAGGCCATGGGGCAAGTACGCGGCAGAGATAAGGGACTCAACCAGGAACGGCGTGAGGGTTTGGTTGGGAACCTTCGACACTGCCGAGGCTGCAGCTTTGGCTTACGACCAAGCTGCATTAGCAATGCGAGGCTCAGTGGCTGTCTTGAATTTCCCACATGAGGTGGTTCGCCTCTCCCTTCAGAACATGATGCACTGTGGCTTCAAGGAAGGGTCCTCTCCGGTTTTGGAGTTGAAGAAGAAGCACTCCATCAAGAGGAAAATGGAAAACAAGAAGATCAAAGATCAGAGGCATCATCAAGAGGAGGTGGTGGTGTTGGAGGACTTGGGGGCAGAGTATTTGGAACAGCTCCTTAGCTTGTCCGAGTATGCTTGCTAG 690 0.4899 MDSSFYAPYPNFELFPTSTDESCSSFITSSQKNNYHQHHPLPFNENDSQEMLLYEVLAQAAAGADSVEAATATTTTPPPYSRDEEVSSKSTMAQEIASYRGVRRRPWGKYAAEIRDSTRNGVRVWLGTFDTAEAAALAYDQAALAMRGSVAVLNFPHEVVRLSLQNMMHCGFKEGSSPVLELKKKHSIKRKMENKKIKDQRHHQEEVVVLEDLGAEYLEQLLSLSEYAC* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3546 229 ProSiteProfiles AP2/ERF domain profile. 98 156 IPR001471 GO:0003700|GO:0006355
Dod01g3546 229 SMART rav1_2 98 162 IPR001471 GO:0003700|GO:0006355
Dod01g3546 229 PANTHER DNA-BINDING DOMAIN 30 224 IPR044808 GO:0003700|GO:0009873
Dod01g3546 229 MobiDBLite consensus disorder prediction 68 92 - -
Dod01g3546 229 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 30 224 - -
Dod01g3546 229 Gene3D AP2/ERF domain 98 158 IPR036955 GO:0003700|GO:0006355
Dod01g3546 229 PRINTS Ethylene responsive element binding protein signature 122 138 IPR001471 GO:0003700|GO:0006355
Dod01g3546 229 PRINTS Ethylene responsive element binding protein signature 99 110 IPR001471 GO:0003700|GO:0006355
Dod01g3546 229 CDD AP2 99 157 IPR001471 GO:0003700|GO:0006355
Dod01g3546 229 Pfam AP2 domain 99 148 IPR001471 GO:0003700|GO:0006355
Dod01g3546 229 SUPERFAMILY DNA-binding domain 99 158 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3546 Dod-Chr1 76717381 76718525 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3546 41 226 AP2-EREBP Transcription Factor Family AT3G23240 53.403 1.63e-61 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod01g3546 AP2 2.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3546 K14516 - qsu:112003251 215.312
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g0670 07 9181635 9185069 Dod01g3546 01 76717381 76718525 ECH
Dod01g3546 01 76717381 76718525 Dod01g3546 01 76717381 76718525 ECH
Dod01g3546 01 76717381 76718525 Dod07g0669 07 9165538 9166636 PCT