Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3524 ATGCATTCGACAACATTCATTTCTCACGCTCAAGAAAGTGATGATATTTCCTGGGGACCAGACCCATTTCAGGATATCCTTGGTTTTTCTGAAAATGTTCCTGTCCAGAATGATCAGGTGGAAAACGGTGCCTGTTATATAAATGATGACAATGTCAAGAAATCTGATTTTGGGGAGTGGGTTGATCAGTTAATGTCCATTGATGATTCTTATCACCCAAATTGGAGTCAGCTTCTTGGTGATGAGAATGTATCAGAACCAAAACCAAAGGCCACGCAGGTGTCCCTGCAGCAGAATAAACCATCTGGGGAAGTTAATGGTATTACTAATTCAACATCTACTGCACCACAAAGTAAGCCTAGAATGCGTTGGACACCAGAACTCCATGAGGCCTTTGTGGAAGCAGTCAATCAGCTTGGTGGCAGTGAGAAGGCTACTCCCAAGGGTGTCTTGAATCTGATGAAAGTTGAGGGCCTTACCATCTATCATGTAAAAAGCCACCTACAGAAGTATAGAACGGCCAGGTACAAACCTGAGACTTCAGAAGGAACTTCTGAGAAAAAGCTAACTTCAATCGAGGAAATGAAATCTCTAGACTTGAAAACGAGTAAGGGGATCACTGAGGCATTGCAGTTGCAGATGGAACTTCAGAAGCGGCTTCACGAACAACTAGAGATTCAAAGAAAGTTGCAGATTCAAATAGAAAACCAAGGGAAGCGCCTTCAGATGATGTTTGAGAAGCAGAGAGAAATGGGAGAAAGCAAGTTGAAAGGCTCATCCTCCCCTTTGGATGAGCCTTCTTCTCCACTATCAGACACAGCAATGCCTTCTCCTCATCAAGCAGATAATTTAGAAACTTCAGAAGAGGAACCCAACAACAGTTGCATTAAGAAATCCATGCCTGAAGAGAGTTCCCAGGATGCGTGCAAAAAGCAAATGGTAGATGAAGCTGAAGTAACAAATGAACATGATGCAGTAGGTGATGATCAGTGTGCTGCACCACCCACAAAAAGGGTTAAGAGTTGA 1026 0.4308 MHSTTFISHAQESDDISWGPDPFQDILGFSENVPVQNDQVENGACYINDDNVKKSDFGEWVDQLMSIDDSYHPNWSQLLGDENVSEPKPKATQVSLQQNKPSGEVNGITNSTSTAPQSKPRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVEGLTIYHVKSHLQKYRTARYKPETSEGTSEKKLTSIEEMKSLDLKTSKGITEALQLQMELQKRLHEQLEIQRKLQIQIENQGKRLQMMFEKQREMGESKLKGSSSPLDEPSSPLSDTAMPSPHQADNLETSEEEPNNSCIKKSMPEESSQDACKKQMVDEAEVTNEHDAVGDDQCAAPPTKRVKS* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3524 341 MobiDBLite consensus disorder prediction 94 121 - -
Dod01g3524 341 MobiDBLite consensus disorder prediction 303 325 - -
Dod01g3524 341 MobiDBLite consensus disorder prediction 249 341 - -
Dod01g3524 341 Gene3D - 118 177 - -
Dod01g3524 341 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 119 173 IPR006447 GO:0003677
Dod01g3524 341 Pfam MYB-CC type transfactor, LHEQLE motif 206 250 IPR025756 -
Dod01g3524 341 Coils Coil 207 227 - -
Dod01g3524 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 117 176 IPR017930 -
Dod01g3524 341 MobiDBLite consensus disorder prediction 260 282 - -
Dod01g3524 341 Pfam Myb-like DNA-binding domain 121 172 IPR001005 -
Dod01g3524 341 MobiDBLite consensus disorder prediction 94 120 - -
Dod01g3524 341 SUPERFAMILY Homeodomain-like 117 173 IPR009057 -
Dod01g3524 341 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 341 IPR044848 GO:0003700
Dod01g3524 341 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3524 Dod-Chr1 76517954 76520761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3524 2 287 G2-like Transcription Factor Family AT3G04450 49.836 1.40e-84 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dod01g3524 Myb_DNA-binding 9.9e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3524 - - mtr:MTR_7g115530 469.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3524 01 76517954 76520761 Dod06g1635 06 22161917 22166312 ECH
Dod01g3524 01 76517954 76520761 Dod01g3524 01 76517954 76520761 ECH
Dod01g3524 01 76517954 76520761 Dod06g1635 06 22161917 22166312 PCT