Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3520 ATGGCTCCAAATCCAAGAGTTACGAAGGCCTTTTATGCTATGAAGGCCTTAGGAATTTCAGCAGAAGAGGTGAAGCCGGTTTTAGCAGAGTTGTTAAGAGTGTATGATAAAAACTGGGAACTTATTGAAGAGGACAATTATCGGACACTTGTAGATGCATACTTTGAATTTAAGGAAGATAAGGGAACAAGAGGTAAGAAAAAAGCTCCTTTCAGTTGTCCTGCTGGAGAAACACCAAGACAGAAACTGCACGTGATAGATGAAGATGAACAGGATTTGTTTACAATGGACAATTCAAACCAAAAGTTGCCTTGCAATGTGGTTAAAGATAGAAAAATGTATCCTGAGAAAGCATCATCTGCTGAGCATTGTGATGATTCCGAGCAGGAGCCTCTGAAACCAAGAACTAAGAAACCTAAGTTGCAAATTCGTCCTGTTTCAACAAATTATGATGGATTATCTGAGCCTTCTAATGGAGTCGATCATGGTGTCCAATCTCTGGCAACTCTGAATCAGATCATTCAAAGTGAAAATGCTTCATCATCATGCAATAATAATACCACAACTCGCAGGTGTAACATCACTGTTGCTTCTTCACCCCTGGGAGAAGTTAAATTGTCTTTAAATTGCGACTCTACCTTGGGACAAACAAATTTCTGTACTCCTAATTTGGATGCTGTCATGAAGTTCATGGAGGAAAAATACCTTATGTCTTGCAAGACTGCTGGGCCGCAATTTTCTATGGTGAAGCTGTTAGATGGTTTTTGCAGGAGTTATCTGAAGTTGGGACATCGAAAAGGATCAAATTCCAAGGATGCCAGTTCACACAACTTGGCGAGTCTGCCACAGCAGGCTGTTACTAAAGATAAAAGGAATTCCTTTCGTGTTGTCAGTGACATAACGAAAGGTTCAGAAAAAATGAAAATCTCATTAGTAGATGAAATTGGCACTGAGGATTTGCCGAAGTTTAACTACATACCGCATAATATAATATACCAAAGTGCTAATGTAAATATTTCTTTGGCTCGGATTTCTGATGAGGACTGCTGTTCGGATTGTTCAGGCAACTGTCTTTCCTTATCATTGCCTTGTGCATGTGCTCGGGAAACAGGTGGAGAGTTTGCTTACACCCCTCAAGGTTTGTTGAGAGAAGAATTTCTAGCAGCTTGCGTGTCTATGAAGAATCAACCTCAAGATCATCATTTCGTGTATTGCCAAGAGTGCCCAGTGGAGAAGTCTAAGAATGTGTACATGCCCGAACAGTGCAAAGGGCATATGCTTAGGAAATTTATAAAAGAATGTTGGAGGAAATGTGGATGCGACATGCGGTGCGGAAATCGGATAGTGCAACGAGGTATAAGATGCAAATTGCAGGTGTTCATGACTCGTGAAGGAAAGGGCTGGGGCCTTAGACCACTAGAGGATTTGCCGAAGGGAACCTTCGTATGTGAATATGCAGGGGAAATATTAACCAATACGGAGTTATACGAAAGGAATATGGAGACTAGTGGCAATGACAGACATACATATCCTGTTACTCTTGATGCAGACTGGGGCACGGAAGGGGTGTTAAAGGATGAGGAGGCACTATGTTTAGATGCAACGTATAATGGAAATGTTGGAAGGTTTATCAATCATAGATGCTTCGATGCAAATCTCATAGATATTCCCGTTGAAGTGGAGACTCCAGATCACCACTATTATCATCTTGCCTTCTTTAGCAACAGGAACGTGAAAGCCTACGAGGAGTTGACATGGGATTATGGCATTGACTTTGATGATCTGGACCATCCTATTAAAGCATTTCAATGCTGTTGTGGAAGCGCCTTCTGCTGTGATAAGAAAGGAAAAGTTCCACCTCCACCTGGTTGA 1872 0.4145 MAPNPRVTKAFYAMKALGISAEEVKPVLAELLRVYDKNWELIEEDNYRTLVDAYFEFKEDKGTRGKKKAPFSCPAGETPRQKLHVIDEDEQDLFTMDNSNQKLPCNVVKDRKMYPEKASSAEHCDDSEQEPLKPRTKKPKLQIRPVSTNYDGLSEPSNGVDHGVQSLATLNQIIQSENASSSCNNNTTTRRCNITVASSPLGEVKLSLNCDSTLGQTNFCTPNLDAVMKFMEEKYLMSCKTAGPQFSMVKLLDGFCRSYLKLGHRKGSNSKDASSHNLASLPQQAVTKDKRNSFRVVSDITKGSEKMKISLVDEIGTEDLPKFNYIPHNIIYQSANVNISLARISDEDCCSDCSGNCLSLSLPCACARETGGEFAYTPQGLLREEFLAACVSMKNQPQDHHFVYCQECPVEKSKNVYMPEQCKGHMLRKFIKECWRKCGCDMRCGNRIVQRGIRCKLQVFMTREGKGWGLRPLEDLPKGTFVCEYAGEILTNTELYERNMETSGNDRHTYPVTLDADWGTEGVLKDEEALCLDATYNGNVGRFINHRCFDANLIDIPVEVETPDHHYYHLAFFSNRNVKAYEELTWDYGIDFDDLDHPIKAFQCCCGSAFCCDKKGKVPPPPG* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3520 623 Pfam Pre-SET motif 300 447 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Dod01g3520 623 Gene3D - 1 60 IPR043017 -
Dod01g3520 623 Gene3D SET domain 278 597 IPR046341 -
Dod01g3520 623 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 1 617 - -
Dod01g3520 623 MobiDBLite consensus disorder prediction 116 137 - -
Dod01g3520 623 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 617 IPR025776 -
Dod01g3520 623 SMART set_7 455 595 IPR001214 GO:0005515
Dod01g3520 623 ProSiteProfiles SET domain profile. 455 589 IPR001214 GO:0005515
Dod01g3520 623 Pfam SET domain 467 589 IPR001214 GO:0005515
Dod01g3520 623 MobiDBLite consensus disorder prediction 116 138 - -
Dod01g3520 623 Pfam Ubiquitin-binding WIYLD domain 6 59 IPR018848 GO:0018024
Dod01g3520 623 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 617 - -
Dod01g3520 623 CDD SET_SETDB-like 321 589 - -
Dod01g3520 623 ProSiteProfiles Pre-SET domain profile. 353 452 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Dod01g3520 623 SMART preset_2 297 439 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Dod01g3520 623 SUPERFAMILY SET domain 307 611 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3520 Dod-Chr1 76476738 76486598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3520 431 589 C2H2 Transcription Factor Family AT2G23740 43.750 3.52e-31 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Dod01g3520 Pre-SET 2.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3520 - - gsj:114402909 856.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3520 01 76476738 76486598 Dod06g1636 06 22174219 22184544 PCT