Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3501 ATGGTGACGAAGCAGCAGGTGGTGAAGGTGAAGCGGCAGACGCTGGAAGCATGCATGAGATGCCCTCTCTGCAATAACCTCCTTAGAGACGCCACCACCATCTCCGTCTGCCTCCACACCTTTTGCAGGAAGTGCATATACGAGAAGCTTTCAGATGATGAGGTGGATTGCTGTCCAGTATGCAATATTGACCTGGGATGCCTTCCAGTGGAAAAACTCAGGCCAGACCACAATTTGCAAGATATTAGGGCCAAAATATTCCCATTTAGGCGAAGAAAGGTCAAAGCCCCAGAAGTTGTTCCTTCAGTATCGCTGCCAGCAAAACGGAAGGAAAGATCACTTTCATCATTGGTGGTTAGTGCTCCCAAAGTTTCAACTCAGGCTGGCTTTACAGGAAAGAGAACAAAAACCGGAACAAGAAAGGCTGCTGCTTTACGTGGATGCAGTTTTCTTCTCGAAGAATCTGTAAAGGCAGAAGAAACATACGGTGAAGATAATCTGGATTCATCCATAGCTGAGCCTTCTAAAAAGCATAGGTCCAGTGAAGATACAGAGAAAAGTATGGAACTTGCAGAAGGGAAGGCTGATCTCTGGACGCCCTTGAACTGTCTTGTTGAAGCTGCCAATAGAACAAAGTCCTCCAGGTCAAACTCACAAGGGACTCCTCATGCCAAGTTAGAGTCTCCAACTACTCCTCATGTTGGGTTAGATACATCTGAAATTACAACCAAATCAGAACCGCCTGTTTCAGTCCACAGTGAATTACACATGCCTAAAACCAAAAACAAGGATAATGGGCATAAAAAGTTTGGAGATGACAAGGAGGGAAGCAACTTTCCTTCAGGACCAGTGAAGCGAAGAAGGCTGCGTGCTGCTGGTCAGAAAAGAGCAGAAGCATCTGAGATGTCTGCCTCAGCCCAAGTCATGCTTGATGCAACTGGGAGCAGGTGCAACAGAAAAAACAATCCTATTTGGTTTTCATTAGTTGCTTCAGAGGACCAGAAAGGAGATGTTCCATTGCCACAGATCTCAGCATGTTATTTAAGAATAAAGGATGGTACAGTGCCTGTCTCATTTATTCAAAAGTACCTTGTGAAAAAACTTAATCTAGCCAGCGAAGCAGAGGTAGAAATAATGTGCCGGGGTCAGCCTGTGCTGCCAACTTTGCAACTACATAACTTAGTAGATCTATGGTTCCGCACAGCATCAACCTCAAAAAAGATACCGGCATCTGTGGGCTCCTCGGCTAAGGACTTTGTGATGGTTTTGTCATATTGTCGAAAGGCTGTACCTCATTGA 1299 0.4534 MVTKQQVVKVKRQTLEACMRCPLCNNLLRDATTISVCLHTFCRKCIYEKLSDDEVDCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPFRRRKVKAPEVVPSVSLPAKRKERSLSSLVVSAPKVSTQAGFTGKRTKTGTRKAAALRGCSFLLEESVKAEETYGEDNLDSSIAEPSKKHRSSEDTEKSMELAEGKADLWTPLNCLVEAANRTKSSRSNSQGTPHAKLESPTTPHVGLDTSEITTKSEPPVSVHSELHMPKTKNKDNGHKKFGDDKEGSNFPSGPVKRRRLRAAGQKRAEASEMSASAQVMLDATGSRCNRKNNPIWFSLVASEDQKGDVPLPQISACYLRIKDGTVPVSFIQKYLVKKLNLASEAEVEIMCRGQPVLPTLQLHNLVDLWFRTASTSKKIPASVGSSAKDFVMVLSYCRKAVPH* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3501 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 113 IPR013083 -
Dod01g3501 432 MobiDBLite consensus disorder prediction 210 249 - -
Dod01g3501 432 MobiDBLite consensus disorder prediction 256 281 - -
Dod01g3501 432 ProSitePatterns Zinc finger RING-type signature. 37 46 IPR017907 -
Dod01g3501 432 SMART ring_2 21 61 IPR001841 -
Dod01g3501 432 MobiDBLite consensus disorder prediction 210 300 - -
Dod01g3501 432 MobiDBLite consensus disorder prediction 161 193 - -
Dod01g3501 432 Gene3D - 304 409 - -
Dod01g3501 432 PANTHER UBIQUITIN PROTEIN LIGASE DRIP2, PUTATIVE-RELATED 5 429 - -
Dod01g3501 432 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 5 429 IPR044807 GO:0004842
Dod01g3501 432 Pfam Zinc finger, C3HC4 type (RING finger) 20 61 - -
Dod01g3501 432 SUPERFAMILY RING/U-box 15 86 - -
Dod01g3501 432 ProSiteProfiles Zinc finger RING-type profile. 21 62 IPR001841 -
Dod01g3501 432 MobiDBLite consensus disorder prediction 161 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3501 Dod-Chr1 76239454 76244632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3501 7 351 C3H Transcription Factor Family AT2G30580 44.536 2.85e-89 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3501 K16277 - gmx:100783999 689.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3501 01 76239454 76244632 Dod01g3501 01 76239454 76244632 ECH