Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3496 ATGACAAGTGTTATGGAGGCAGAGCGAGACAAGTACAGCACGATCAACTTCGAAGAAACGGAGCTGAGACTGGGGCTGCCACTGATCAGTGGAAATACTCATGAAGGGGAGTCCATCCTCACCCTCAAGAACATCTTTACAGGGAAGAGAGGTTTCTCGGACACCACTACTACTGCTAATGTGGATTTGAAGCTTAATCTCTCTTCAAACAATGTTGTCTTGGCCTCATCTGAGAACAATAAGGCTAGAGAGAAGAACACTGCTACTTGTACTAATGCATCTCCCCCTGCTCGTGCTAACGACCCAGCAAAGCCACCTGCAAAGGCACAAGTTGTGGGATGGCCACCAGTACGATCATTCAGGAAGAACATTGTCAACGGTCAAAGGAGCAACAATAACGATGGAGCAGAAAAGGCCGCCACCGCCACCGCCACAGCAACCTCCACCACAACCAGCAACAACAGCAACAATGTCAACGGTGGTGCAGCAGCAGCATTCGTGAAGGTGAGCATGGACGGTGCACCCTATTTACGCAAGGTGGACTTGAAGTTGTACAAGAGCTACCAGGAGCTGTCTGATGCGCTGGCCAAGATGTTCAGTTCCTTCACCATTAATGGCAAATGTGGATCCCACGGGATGATGAAGGACTTTATGAATGAGAGCAAACTGATTGATCTTCTGAACGGCTCTGATTATGTCCCAACCTATGAAGACAAAGATGGAGACTGGATGCTTGTCGGCGACGTACCCTGGGAAATGTTCGTGGAATCATGCAAGCGCCTGCGCATAATGAAAGGGTCCGAGGCAATCGGGCTAGCACCAAGAGCAGTAGAAAAGTGCAAGAACAGAAATTGA 855 0.4912 MTSVMEAERDKYSTINFEETELRLGLPLISGNTHEGESILTLKNIFTGKRGFSDTTTTANVDLKLNLSSNNVVLASSENNKAREKNTATCTNASPPARANDPAKPPAKAQVVGWPPVRSFRKNIVNGQRSNNNDGAEKAATATATATSTTTSNNSNNVNGGAAAAFVKVSMDGAPYLRKVDLKLYKSYQELSDALAKMFSSFTINGKCGSHGMMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVEKCKNRN* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3496 284 Pfam AUX/IAA family 19 275 IPR033389 -
Dod01g3496 284 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 143 IPR003311 GO:0005634|GO:0006355
Dod01g3496 284 Gene3D - 159 278 - -
Dod01g3496 284 ProSiteProfiles PB1 domain profile. 164 266 IPR000270 GO:0005515
Dod01g3496 284 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 150 277 IPR003311 GO:0005634|GO:0006355
Dod01g3496 284 PANTHER AUXIN-INDUCED PROTEIN AUX28 150 277 - -
Dod01g3496 284 MobiDBLite consensus disorder prediction 79 110 - -
Dod01g3496 284 PANTHER AUXIN-INDUCED PROTEIN AUX28 12 143 - -
Dod01g3496 284 MobiDBLite consensus disorder prediction 79 96 - -
Dod01g3496 284 SUPERFAMILY CAD & PB1 domains 164 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3496 Dod-Chr1 76184966 76188792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3496 168 269 B3 DNA Binding Superfamily AT3G61830 34.314 4.86e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dod01g3496 AUX_IAA 3.9e-85 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3496 K14484 - gmx:100796888 333.183