Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3494 ATGGAGGAGGGTAATTGGAGGGAGGGTTTGGGAGAGGAGTTGTTGGAGCACCATATGTTGGCAGTGCCATCGGCATACACGAGTGGGTTGATTGGGATGGGTGTGGCCATGCCTACTTCAGGTTTGAATTTGGAGCCAAGCTTTGTGAGACACCAACATCAACATAGTACCCGTGCTAGTGGTGATAGGTTCCGTGATAACAACGTTGTTGTTGTTGAGGGCAATGACCATCATCATCACCAGCTCCATCTGATGAGTAACCACCATACTTCTAACAACAGCACTATGTCTATGTCATCATCCTCTTCTGCTACTTCAGAAACCAACAATAATATCAGCGATGCGGTGCATATGAGGGGGATGTATGCGGCATTGGGACAATTGCATAGTCATGCTCATGCTCCTCATGCTTATGCTCACTCTTTCCGTGCCACAGTTCCACCTCCTGCTCCGTCCCTACAACTCCCGCACCAACAACACCAGCCCCTTCATAGCCTGCAGCCACCTGCAGCTCCAGCAGCTGCTGTTGCACAACCACCTGGCATCCGCCCTCGAGTGCGAGCAAGAAGAGGCCAGGCCACAGACCCCCACAGCATTGCTGAGCGATTGCGTCGTGAAAAAATCGCCGAAAGAATGAAGGCATTGCAGGAATTAGTTCCTACCTCTAATAAGACGGACAAAGCAGCGATGCTTGACGAAATTGTGGACTACGTCAAGTTCTTAAGGCTCCAGGTTAAGGTCCTGAGCATGAGTAGACTGGGGGGAGCGGGAGCAGGTGCAATTGCTCAGCTTGTGGCTGATGTTCCCCTATCTGCATTAGAGGGTGAGGACACTGAAGGTGGATCCAATCAGCAAGATTGGTCCAATGATGGCATAGAACAAGAAGTGGCTAAACTTATGGAAGAAGATGTTGGAGCTGCCATGCAATTTCTTCAGTCCAAGGCACTTTGCATCATGCCAGTATCTCTAGCCTCAGCCACTCTTTGTACGCCCCAGTCAGAAGCACCAAAATCAAACAGCCATTCATAG 1029 0.5015 MEEGNWREGLGEELLEHHMLAVPSAYTSGLIGMGVAMPTSGLNLEPSFVRHQHQHSTRASGDRFRDNNVVVVEGNDHHHHQLHLMSNHHTSNNSTMSMSSSSSATSETNNNISDAVHMRGMYAALGQLHSHAHAPHAYAHSFRATVPPPAPSLQLPHQQHQPLHSLQPPAAPAAAVAQPPGIRPRVRARRGQATDPHSIAERLRREKIAERMKALQELVPTSNKTDKAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAGAIAQLVADVPLSALEGEDTEGGSNQQDWSNDGIEQEVAKLMEEDVGAAMQFLQSKALCIMPVSLASATLCTPQSEAPKSNSHS* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3494 342 MobiDBLite consensus disorder prediction 142 196 - -
Dod01g3494 342 Pfam Helix-loop-helix DNA-binding domain 197 241 IPR011598 GO:0046983
Dod01g3494 342 Gene3D - 187 249 IPR036638 GO:0046983
Dod01g3494 342 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 61 333 - -
Dod01g3494 342 PANTHER DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED 61 333 - -
Dod01g3494 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 192 241 IPR011598 GO:0046983
Dod01g3494 342 SMART finulus 198 247 IPR011598 GO:0046983
Dod01g3494 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 190 251 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3494 Dod-Chr1 76164409 76167623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3494 168 326 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 74.390 3.05e-67 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod01g3494 HLH 3.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3494 - - gmx:100781299 288.5