Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3489 ATGAACAAGGGGGACAACGCGTGGCAGTTAATGGCGGCGACGGTGGTGGGGCTTCAAACGATTCCGGGGCTGGTAATCCTGTACGGAAGCATAGTGAAGAAGACGTGGGCCATTAACTCAGCCTTCATGGCCTTCTACGCCTTCGCCTGTGTCCTCCTTTGCTGGGTTGCGTGGGGTTTCCGCATGTCGTTCGGCGACAAATGGGTGTTCTTCTTGGGGAAACCCGCGGTGGCGCTGGACGAGAAGTTCCTTCTAGGGAAAGCGTTTCTTGGGGCGTTCCCTACGGCTACCATGGTGTTCTTTCAGGGCGTGTTTGCTGCTATTACTTTGGTGTTGATAGCGGGTTCGTTGCTGGGGAGGATGAACATTCGTGCGTGGATGTTGTTTGTGCCGCTTTGGGTTACTTTCTCGTACACTGTCACCGCCTTCAGTGTTTGGAGCCCCAATGGGTGGTTGGCAAAGCTTGGGGTTATTGACTTCTCTGGTGGTTTTGTTATTCACCTCTCTTCTGGAGTTGCCGGTTTCACCGCAGCTTATTGGGTGGGTCCACGATCAGAGAAGGACAGGGAGGCATCTGCACCAAACAACATGATTGTGGGGCTTGCAGGCGCAGGCCTGCTTTGGATGGGCTGGACTGGGTTCAACGGCGGAGGCCCATTCGCGGTGAGCTCAATTGCATCTCTGGCTGTCCTTAACACGCACGTGTGCACTGCCACCAGCATCCTCACCTGGGTCCTTCTGGACACCTTCCACTTCGGCAACCCCACCGTCTTTGGCGCCATCCAGGGCATGATGACCGGCCTCGTTTGCATTACCCCTGCCGCAGGAGTTGTGCAAGGGTGGGCAGCCATATTGATGGGGGTGATATCAGGAAGCATTCCTTGGTACACAATGATGATTCTCGAGAACAAGGTGAAATGCTTGAAGCAAATAGACGACCCCATGGCGATATTCCACACACATGCCGTAGCGGGTTCTCTTGGTGGGATTCTCACTGGCATCTTAGCGGTGCCTAAACTGTGCCGTCTCTTCTACATGGTGCCCGATTGGGAAAAGTACACTGGGTTCGTCTATGGCATACAGAGTGGTGCAACTCACGCGGGTCTTAAGCAGCTTGGGATCCAAGTTGCCGCCATTCTTTTCGTGGTTATCTTCAACATTATTGTGACGAGCTTGATTTGCCTGTTTGTGAGGGCCATTGTGCCACTAAGGCTTGACGATGGTGCATTGCAAGTGGGTGACAAGGCCGTGCATGGAGAGGTTGCTTTTGCCTTGTATGGTGGTGCTGAGGATGCCAAATTTGAGAACTTCAACCACAACAAAATCTATGATACTCCAGATTTAAGCGAAGTTCAGATGGTATAA 1365 0.5289 MNKGDNAWQLMAATVVGLQTIPGLVILYGSIVKKTWAINSAFMAFYAFACVLLCWVAWGFRMSFGDKWVFFLGKPAVALDEKFLLGKAFLGAFPTATMVFFQGVFAAITLVLIAGSLLGRMNIRAWMLFVPLWVTFSYTVTAFSVWSPNGWLAKLGVIDFSGGFVIHLSSGVAGFTAAYWVGPRSEKDREASAPNNMIVGLAGAGLLWMGWTGFNGGGPFAVSSIASLAVLNTHVCTATSILTWVLLDTFHFGNPTVFGAIQGMMTGLVCITPAAGVVQGWAAILMGVISGSIPWYTMMILENKVKCLKQIDDPMAIFHTHAVAGSLGGILTGILAVPKLCRLFYMVPDWEKYTGFVYGIQSGATHAGLKQLGIQVAAILFVVIFNIIVTSLICLFVRAIVPLRLDDGALQVGDKAVHGEVAFALYGGAEDAKFENFNHNKIYDTPDLSEVQMV* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3489 454 TIGRFAM amt: ammonium transporter 5 422 IPR001905 GO:0008519|GO:0016020|GO:0072488
Dod01g3489 454 SUPERFAMILY Ammonium transporter 2 405 - -
Dod01g3489 454 PRINTS Rhesus blood group protein signature 322 338 IPR002229 GO:0005887
Dod01g3489 454 PRINTS Rhesus blood group protein signature 229 251 IPR002229 GO:0005887
Dod01g3489 454 PRINTS Rhesus blood group protein signature 198 216 IPR002229 GO:0005887
Dod01g3489 454 PRINTS Rhesus blood group protein signature 102 118 IPR002229 GO:0005887
Dod01g3489 454 PRINTS Rhesus blood group protein signature 284 302 IPR002229 GO:0005887
Dod01g3489 454 PANTHER AMMONIUM TRANSPORTER 1 452 - -
Dod01g3489 454 PANTHER AMMONIUM TRANSPORTER MEP2 1 452 IPR001905 GO:0008519|GO:0016020|GO:0072488
Dod01g3489 454 ProSitePatterns Ammonium transporters signature. 159 184 IPR018047 GO:0008519|GO:0016020|GO:0072488
Dod01g3489 454 Pfam Ammonium Transporter Family 7 422 IPR024041 GO:0008519|GO:0016020|GO:0072488
Dod01g3489 454 Gene3D Ammonium transporter AmtB like domains 1 426 IPR029020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3489 Dod-Chr1 76113154 76115537 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3489 96 444 Inorganic Solute Cotransporters AT2G38290 54.155 1.22e-122 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3489 K03320 - gmx:100782944 777.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3489 01 76113154 76115537 Dod01g3489 01 76113154 76115537 ECH