Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3484 ATGGAGAGCGAACAGCACGGATCCCCCACCCAAACCCTTCAAGAATTCTTCAAAGTTTTCATGCCCAGCACAAGCTCTACCGAGTTGCGCATACCAAAGGCTTTCACCAAGTTTTTCAATGGAATCACACCAAGCAAAGCTACTCTTGTGGACCATGCTGGAAAGTGTTGGGATATTGAGTTGGAGAAAATTAAAGATGGTTTGGTCCTCACAAATGGGTGGCAGCATTTTGCAACGGACAAGTGTTTGGAAGAGGCTGACTTCCTGGTTTTTGAGTACAATGGCAACTCCACCTTCTACGTGAAGATATTTTCTAAAAGTGGAATCAGGAAGGAAGCTGCAAATGGTGGAAAACATGTTCCCATTGTGATCTTGGATGAAGATTCTGATGACCAGAGTGCTGGTAGAAAAATGCTGCGGGGTCTTAAACGGAAACATTCACCAACCACGCTCAAAATAAACGAGACATCTGATTCAGAGGGAACTTGGGGAAAAAAGATAGAAAGAGCTAATTCTGAAGCAAATGGTAATGACTATGAGAAGAAGGCTTCTGGTCTTGCAAAGCGTGTTCCCATGAAGAACCCTCACTTTGTGATACCTTTTTCTGGCTGGAGACTGACGTCGTCGAATGTGGAACTACCTAAATTAGTACTGAGGCAATTGAATATCAGGCTGAGATCAAAGATTAATCTGAGAGACGAGAATGACAAACTATGGCCGGTGATGATCCGTACCACCACCTCGAAGGGCGGCCGTACATTTTTGGGCTCTGGATGGTCTGATTTCCGGAATGCTAAAAACATAAAAGAAGGTCAGCTGTGTGTTTTTAAGTTTGTCATTGGCAGAGCAAATGTAGCTGAAGAAGTGCTTTCACAGTCACAGTCACATGGAGATGGCACAGCGTCGCCGTTCCCCCACCAAAACCCTTCTTCAAGAATTCTTCAAGTTTGCATGCCCGACACAAGCTCTACCCACTTGCGCATACCAAAGGCTTTCACCAGATTCTTCAATGGAATCACACCAAGCAAGGCCACACTTGTAGACCATGATGATGGAAACTCCTGGGATATTGGGTTGGAGAAAATGAAGGATGGCTTCTTGGTTATCAAAAATGGGTGGAAGCAGTTTGCCAGGGACAAGTGTTTAGAAGAGGCAGACTTCTTGCTTTTTGAGTACGATGGCAAGTCCACCTTCTACGTCAAGATATTCTCCAAAAGTGGAATCAAGAAAGAACCTGCAAATGGTGGAAAACATGTCCCCATTGGATGA 1269 0.446 MESEQHGSPTQTLQEFFKVFMPSTSSTELRIPKAFTKFFNGITPSKATLVDHAGKCWDIELEKIKDGLVLTNGWQHFATDKCLEEADFLVFEYNGNSTFYVKIFSKSGIRKEAANGGKHVPIVILDEDSDDQSAGRKMLRGLKRKHSPTTLKINETSDSEGTWGKKIERANSEANGNDYEKKASGLAKRVPMKNPHFVIPFSGWRLTSSNVELPKLVLRQLNIRLRSKINLRDENDKLWPVMIRTTTSKGGRTFLGSGWSDFRNAKNIKEGQLCVFKFVIGRANVAEEVLSQSQSHGDGTASPFPHQNPSSRILQVCMPDTSSTHLRIPKAFTRFFNGITPSKATLVDHDDGNSWDIGLEKMKDGFLVIKNGWKQFARDKCLEEADFLLFEYDGKSTFYVKIFSKSGIKKEPANGGKHVPIG* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3484 422 SUPERFAMILY DNA-binding pseudobarrel domain 12 108 IPR015300 -
Dod01g3484 422 Gene3D - 177 290 IPR015300 -
Dod01g3484 422 SUPERFAMILY DNA-binding pseudobarrel domain 315 407 IPR015300 -
Dod01g3484 422 SMART B3_2 197 293 IPR003340 GO:0003677
Dod01g3484 422 SMART B3_2 313 406 IPR003340 GO:0003677
Dod01g3484 422 SMART B3_2 16 107 IPR003340 GO:0003677
Dod01g3484 422 Gene3D - 307 407 IPR015300 -
Dod01g3484 422 Gene3D - 9 108 IPR015300 -
Dod01g3484 422 Pfam B3 DNA binding domain 208 281 IPR003340 GO:0003677
Dod01g3484 422 Pfam B3 DNA binding domain 319 405 IPR003340 GO:0003677
Dod01g3484 422 Pfam B3 DNA binding domain 16 106 IPR003340 GO:0003677
Dod01g3484 422 ProSiteProfiles B3 DNA-binding domain profile. 196 293 IPR003340 GO:0003677
Dod01g3484 422 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Dod01g3484 422 SUPERFAMILY DNA-binding pseudobarrel domain 192 279 IPR015300 -
Dod01g3484 422 CDD B3_DNA 195 279 IPR003340 GO:0003677
Dod01g3484 422 ProSiteProfiles B3 DNA-binding domain profile. 311 406 IPR003340 GO:0003677
Dod01g3484 422 CDD B3_DNA 322 404 IPR003340 GO:0003677
Dod01g3484 422 PANTHER B3 DOMAIN-CONTAINING 317 411 - -
Dod01g3484 422 PANTHER B3 DOMAIN-CONTAINING 6 289 - -
Dod01g3484 422 CDD B3_DNA 16 105 IPR003340 GO:0003677
Dod01g3484 422 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0723500-LIKE ISOFORM X1 317 411 - -
Dod01g3484 422 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0723500-LIKE ISOFORM X1 6 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3484 Dod-Chr1 75995855 76000292 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3484 312 411 B3 DNA Binding Superfamily AT5G66980 38.835 5.42e-12 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dod01g3484 B3 6e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3484 - - ahf:112695440 308.916