Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3479 ATGATGCGCTTTACCCAACATTGTCACAAACTCGGGGCTTCTAGGTACTCCTTGGACATCCCTCGGAAGTGCGATCAAGGCCTTCATGGGCATGCATATGGTGCATCCTATTTAGGAGCTTCTTATGCTGCAGCTGCTTCTCCTCCAGCAACGGTGTCGTTTTGCTGTTCCTCTCCCAATGACGAAGCTCGCCTTCTCAGATTCGTCTCTTCCCTCCGCCCTCTGAATCCCTTCGATCTGCTAGAACTTTGTTCTTACACTCACTCAGGAGAGGGAAATCTAATACCTGTTGATGTCATGGAGCAGTATGAAGTACTTGAGCAAATTGGAAAAGGTGCTTTTGGTTCTGCTCTTCTTGTCAAACATAAGCATGAGAAGAAAAAATATGTGCTGAAGAAGATTCGCCTTGCTCGCCAAACTGAGCGCTCTCGTAGGTCTGCACACCAGGAGATGGAGCTCATTTCCAAATTAAGAAATCCATTTATAGTGGAGTATAAAGATTCATGGGTAGAAAAGGGTTGCTATGTGTGCATTATTATAGGTTATTGTGAGGGTGGAGACATGGCGGAAGCTATAAAGAAAGCTAATGGTGTCATGTTTCCTGAGGAGAAACTTTGTAAGTGGCTTGTTCAACTTCTTATGGCACTTGACTACTTGCACATGAACCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCCTGACAAAAGATCATGACATACGTCTTGGTGATTTTGGACTAGCCAAAATGTTGACTTCAGATGATCTTACTTCCTCTGTTGTAGGAACACCTAGCTACATGTGCCCTGAGCTCCTTGCTGACATTCCTTATGGTTCTAAATCTGATATTTGGTCCTTGGGATGCTGTATATACGAAATGGCCTCACTTAAGCCTGCATTCAAAGCATTTGTAAGTTTGGCTTCTTTGTTTGCATCTCATCTTGAAGTAACTGCAAGCTCATTGAAAGTGATGTTTCCTTTTGGCAGTCGAGGTCTTGTTAAAAGCATGCTGCGGAAAAATCCAGAGCTTAGGCCTAGTGCTGCAGAGCTACTTGGCCACCCGCATCTTCAACCTTATGTTCTTAAGATCCACCTCAAAATCAATAGCCCCAGGCGAAATACACTGCCGGGTCATTGGCCAGAATCCAACTACATGAAGAATACTAGATTTTTGAGCCCGGAAGATGATCCTGTTTCCATATATAGGGATAAGTGGCATTCTTTCAGTAATGATCGGAATTTAAATCCTAGTATATCTGGAGCAGAGCAAGATTCTCATTGCTCTACTCTAGAAATAGATTGTATGCCTGATAATTTGAATGAAAGATTACCAGAACTGTGTGTTGGAGATAGCTACGAAGTCAAGCCAGTTCACAAGCCAGTTGTTTCCAGAAGCTCTAGCATTGCCAAGACAAGACTCACTTCATCCAAAGCTGCTGCCACCCACAAGAAATCAATGGAACCCTCAAAGAATCAGAAGGCGCTTCCTGTTTCTCACAACACCAAACTACCTTCCCATAATACTCAGAGTCGAAGAGCATCATTACCAGTGCCTAGAACTGGTGCCATTCAACAGTCGCCTCATCGGCCCAATATTGGCTCACTCGACCATGTCAATTCGCCCAATGTTTCAGTTAACTCTCCCCGTATTGATAAGATAGCAGAATTCCCATTGGCATCATATGAAGAACAATTGTTTCCCATCCCTAGAACTTCATCAACCTCTGCACAAGCTTCCTCATACTCCCCTCCTTGTGGCAATGCTTCAACTATGATAGACAAATGCACAGTCGAAGTATGTGATAGGGCCTACATCAAGCCAAGATCTACAGATGCTTGGCAGGGAATCAAGCGCAGCATGTTCAAGAACGATGAGGTTAAAAGCGGCTCATCTGATCAAAATGCAACTGCTGGAGCATCAAGTAACAACTCTTCCGACTTGCGTCGTCGACAGTTCGACACTTCATCATTCCAACAAAGGGCTGAAGCCCTTGAAGGGTTGCTCGAGTTCAGTGCAAGATTACTACATCAAGAAAGGTATGAAGAACTCGGGGTTTTGTTGAAACCGTTTGGTCCCGGGAAAGTTTCCCCAAGGGAAACTGCCATTTGGTTGAGCAAGAGTTTCAAAGAGAACACTTTCAACCGGGACCAATCAGTGTAA 2166 0.44 MMRFTQHCHKLGASRYSLDIPRKCDQGLHGHAYGASYLGASYAAAASPPATVSFCCSSPNDEARLLRFVSSLRPLNPFDLLELCSYTHSGEGNLIPVDVMEQYEVLEQIGKGAFGSALLVKHKHEKKKYVLKKIRLARQTERSRRSAHQEMELISKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGVMFPEEKLCKWLVQLLMALDYLHMNHILHRDVKCSNIFLTKDHDIRLGDFGLAKMLTSDDLTSSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMASLKPAFKAFVSLASLFASHLEVTASSLKVMFPFGSRGLVKSMLRKNPELRPSAAELLGHPHLQPYVLKIHLKINSPRRNTLPGHWPESNYMKNTRFLSPEDDPVSIYRDKWHSFSNDRNLNPSISGAEQDSHCSTLEIDCMPDNLNERLPELCVGDSYEVKPVHKPVVSRSSSIAKTRLTSSKAAATHKKSMEPSKNQKALPVSHNTKLPSHNTQSRRASLPVPRTGAIQQSPHRPNIGSLDHVNSPNVSVNSPRIDKIAEFPLASYEEQLFPIPRTSSTSAQASSYSPPCGNASTMIDKCTVEVCDRAYIKPRSTDAWQGIKRSMFKNDEVKSGSSDQNATAGASSNNSSDLRRRQFDTSSFQQRAEALEGLLEFSARLLHQERYEELGVLLKPFGPGKVSPRETAIWLSKSFKENTFNRDQSV* 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3479 721 ProSitePatterns Protein kinases ATP-binding region signature. 109 132 IPR017441 GO:0005524
Dod01g3479 721 PANTHER SERINE/THREONINE-KINASE NEK4 100 706 - -
Dod01g3479 721 MobiDBLite consensus disorder prediction 493 542 - -
Dod01g3479 721 Pfam Protein kinase domain 103 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod01g3479 721 SUPERFAMILY Protein kinase-like (PK-like) 99 406 IPR011009 -
Dod01g3479 721 MobiDBLite consensus disorder prediction 628 654 - -
Dod01g3479 721 CDD STKc_Nek 102 358 - -
Dod01g3479 721 MobiDBLite consensus disorder prediction 626 654 - -
Dod01g3479 721 MobiDBLite consensus disorder prediction 466 484 - -
Dod01g3479 721 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 100 706 - -
Dod01g3479 721 ProSiteProfiles Protein kinase domain profile. 103 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod01g3479 721 MobiDBLite consensus disorder prediction 462 542 - -
Dod01g3479 721 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Dod01g3479 721 SMART serkin_6 103 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod01g3479 721 Gene3D Transferase(Phosphotransferase) domain 1 183 371 - -
Dod01g3479 721 Gene3D Phosphorylase Kinase; domain 1 85 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3479 Dod-Chr1 75967960 75974510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3479 109 359 MAP Kinase Kinase Kinase AT1G53570 30.196 6.47e-35 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Dod01g3479 Pkinase 5.6e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3479 K08857 - gmx:100796019 971.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3479 01 75967960 75974510 Dod01g3479 01 75967960 75974510 ECH
Dod01g3479 01 75967960 75974510 Dod06g1679 06 22841447 22852109 PCT