Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3478 ATGTTCGATGGAGCACCTGCAGACCAGTTCCACCAATTCATAGCAGCAAGGACCACTCTTCCTCTTCACTTCCCATCATCACTCCATGCCTCTCCGACCCCAAATACCTTCCCACCACCCTTTGATCCTTATAACCCTTCTCATCATCATCATCAGCTTCCACTCCAACCCAACCTCTTTCACCCATTGCACCACAAAGACGATGAACAAGAGAAAGAAGCAAACAGCACGGTTTCTTCAATCAACTTCGAGACTGAGAGAGATCAAACACAGTTACCTAATGATGATGAGTTGATCGATTCCTGGACTAATGATGAAGTTCTTGCACTGTTGAGGATCAGATCTAGCATGGAGAGTTGGTTCCCAGACCTCACATGGGACCATGTCTCTAGGAAGCTAGCAGAGCTTGGATTTAAGAAGAGTGCTGAGAAGTGCAAGGAGAAGTTTGAAGATGAAAGCAGATATTTCAACAACAACATTAACTACGCCAAGAATTACCGGTTCCTTAGTGAGCTTGAAGAGCTCTGTCAAGGTGATCATAACAACCAAAACCCTGCAGATGATCATGTTGTGACCGAAAAGACCCACCACCAGAGCGAAAACCCAAGTGAGGGAGGAGGAGGAGGAGACATGATGGGCCGCGCACTGGAAGAGGATTCAATAAGCAAATCAGTGAGCAAACAATGTGAGGGAAGTGACAAGAACGTGGAAAAGTCAATGAGGGAGGAAAAAAAGAGGAAGAGGAAGAGGCGCGGCATCAGGTTTGAGATGTTCAAGGGTTTCTGCGAGAGCATTGTGAACAAGATGATGGCTCACCAGGAAGAGATACACAACAAGCTCCTCGAGGACATGATGAAAAGAGATGAAGAGAAGTTTGCAAGAGAGGAGGCGTGGAAGAAGCAAGAGATGGAGAGGATGAACAAGGAGCTTGAGGTGATGGCACAAGAGCAAGCCATTGCTGGGGATAGGCAAACCACCTTCATTGATTTCTTGAAGAAATGTGCAGCAGCAAGTTCCCATAATTTTGGAGATGGAAACGGAAAGCTAATCAACAAAATTACAACAAAGTATCCAAATCAAAATGGATCAAGCACTTCTTCTCCTCTTCCTCCAATATTGCACTCCCAAAACCCTAAGCCTTCTACTGGAGAGAGCAATCTTGAGCCTGTAAGACCTCCTTCTAATGTGATTCTAAATCATCAGATTCAAAGCACTTGTTTTTCCCCTCCTTCCCAAAACAATCCGGGTTTATTACCCGTTGCAGTAATCACAGCAGAAAACCTTAGCTCAAGTGACAGGATATTACAAGTTCCTTCTTCTTCTTCCAATTCATCTACACCTGCTCCCAACAACCCTAGTCCTTCCCTCAACAGCCAACCACTAGAGTCAAATTCAGCTTCCACATTTAAACCATCCTTAACCATTGATCAGAAAGATGATGTTGGGAGAAGATGGCCAAGAGATGAAGTGCTGGCACTGATAAACCTCAGATGCACAAGCCTAAAGAATAGCAGCAGTGAAGAGATCAAGGAAGGAAACAATAATAAGGCTCCTCTGTGGGAGAGAATCTCACAAGGGATGTCGGAGCTGGGATACAATAGGAGTGCAAAGAGGTGTAAAGAGAAATGGGAGAACATAAACAAGTACTTCAGAAAAACAAAAGATGTTAATAAGAAGAGGTCCATTGACTCAAGGACCTGTCCCTACTTCCATCAACTGAGAAATCTTTATAGCCAAGGAAAACTTGCTCCACAAATATCTGAGACTGATGAGAGGCAAGAAAACCAATTGAATACTATTCCAACCGCGAATTCCGGGCAATTGCTGCCACAAGATCAAGCCCAACTAGCTGAGTCTCCTCAAGTGGGGTCTGGTGGTTTCACTGTGCATGATGATCATGGAGGTCAGGAAACTCTGATACCAGCACCTCATTCGAATTTTGACTATTTTTAA 1953 0.4439 MFDGAPADQFHQFIAARTTLPLHFPSSLHASPTPNTFPPPFDPYNPSHHHHQLPLQPNLFHPLHHKDDEQEKEANSTVSSINFETERDQTQLPNDDELIDSWTNDEVLALLRIRSSMESWFPDLTWDHVSRKLAELGFKKSAEKCKEKFEDESRYFNNNINYAKNYRFLSELEELCQGDHNNQNPADDHVVTEKTHHQSENPSEGGGGGDMMGRALEEDSISKSVSKQCEGSDKNVEKSMREEKKRKRKRRGIRFEMFKGFCESIVNKMMAHQEEIHNKLLEDMMKRDEEKFAREEAWKKQEMERMNKELEVMAQEQAIAGDRQTTFIDFLKKCAAASSHNFGDGNGKLINKITTKYPNQNGSSTSSPLPPILHSQNPKPSTGESNLEPVRPPSNVILNHQIQSTCFSPPSQNNPGLLPVAVITAENLSSSDRILQVPSSSSNSSTPAPNNPSPSLNSQPLESNSASTFKPSLTIDQKDDVGRRWPRDEVLALINLRCTSLKNSSSEEIKEGNNNKAPLWERISQGMSELGYNRSAKRCKEKWENINKYFRKTKDVNKKRSIDSRTCPYFHQLRNLYSQGKLAPQISETDERQENQLNTIPTANSGQLLPQDQAQLAESPQVGSGGFTVHDDHGGQETLIPAPHSNFDYF* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3478 650 SMART sant 98 155 IPR001005 -
Dod01g3478 650 SMART sant 481 549 IPR001005 -
Dod01g3478 650 Gene3D - 102 158 - -
Dod01g3478 650 Gene3D - 485 552 - -
Dod01g3478 650 ProSiteProfiles Myb-like domain profile. 484 547 IPR001005 -
Dod01g3478 650 MobiDBLite consensus disorder prediction 186 200 - -
Dod01g3478 650 PANTHER TRIHELIX TRANSCRIPTION FACTOR GTL2 15 641 - -
Dod01g3478 650 MobiDBLite consensus disorder prediction 353 393 - -
Dod01g3478 650 MobiDBLite consensus disorder prediction 31 91 - -
Dod01g3478 650 Pfam Myb/SANT-like DNA-binding domain 100 161 IPR044822 -
Dod01g3478 650 Pfam Myb/SANT-like DNA-binding domain 483 575 IPR044822 -
Dod01g3478 650 MobiDBLite consensus disorder prediction 433 474 - -
Dod01g3478 650 MobiDBLite consensus disorder prediction 617 650 - -
Dod01g3478 650 PANTHER - 15 641 - -
Dod01g3478 650 CDD GT1 102 157 - -
Dod01g3478 650 MobiDBLite consensus disorder prediction 216 242 - -
Dod01g3478 650 MobiDBLite consensus disorder prediction 353 389 - -
Dod01g3478 650 CDD GT1 483 554 - -
Dod01g3478 650 MobiDBLite consensus disorder prediction 433 475 - -
Dod01g3478 650 Coils Coil 300 320 - -
Dod01g3478 650 MobiDBLite consensus disorder prediction 178 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3478 Dod-Chr1 75951427 75954254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3478 1 579 Trihelix Transcription Factor Family AT5G28300 38.986 1.77e-97 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Dod01g3478 Myb_DNA-bind_4 1.1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3478 - - gmx:100795995 593.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3478 01 75951427 75954254 Dod01g3478 01 75951427 75954254 ECH
Dod01g3478 01 75951427 75954254 Dod06g1680 06 22881242 22883940 PCT