Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3469 ATGGCGGACAAGGCGGTTACCATCCGTACCAGAAAGTTCATGACAAACAGGCTTCTCTCCAGGAAGCAGTTCATCATCGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAGGCTGAGCTTAAGGAGAAGCTCGCGAGGATGTATGAAGTGAAGGACCCCAACACTGTATTTGTCTTCAAATTCAGGACACACTTTGGAGGTGGCAAATCCACTGGATTTGGTTTGATTTATGATTCAGTTGATAATGCAAAGAAATATGAACCCAAGTACAGGCTTATCAGGAATGGGCTTGATACCAAGGTAGAGAAGTCAAGAAAGCAAATGAAGGAAAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTGAAGAAGACCAAGGCTTCGGAAGCTGCCAAGAAGAAATGA 405 0.442 MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRANVSKAELKEKLARMYEVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVDNAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASEAAKKK* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3469 134 PANTHER 40S RIBOSOMAL PROTEIN S24 1 133 IPR001976 GO:0003735|GO:0005840|GO:0006412
Dod01g3469 134 Pfam Ribosomal protein S24e 26 103 IPR001976 GO:0003735|GO:0005840|GO:0006412
Dod01g3469 134 PANTHER 40S RIBOSOMAL PROTEIN S24 1 133 - -
Dod01g3469 134 Gene3D - 1 133 - -
Dod01g3469 134 ProSitePatterns Ribosomal protein S24e signature. 66 88 IPR018098 -
Dod01g3469 134 MobiDBLite consensus disorder prediction 102 134 - -
Dod01g3469 134 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 6 108 IPR012678 GO:0003735|GO:0005840|GO:0006412
Dod01g3469 134 Hamap 30S ribosomal protein S24e [rps24e]. 4 106 IPR001976 GO:0003735|GO:0005840|GO:0006412
Dod01g3469 134 MobiDBLite consensus disorder prediction 110 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3469 Dod-Chr1 75856900 75859875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3469 1 133 Cytoplasmic Ribosomal Protein Gene Family AT5G28060 86.466 9.59e-85 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3469 K02974 - gmx:100802918 240.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3469 01 75856900 75859875 Dod01g3469 01 75856900 75859875 ECH
Dod01g3469 01 75856900 75859875 Dod06g1691 06 23110231 23112433 PCT