Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3418 ATGGCAAACGACAGTCACAAGAGATATTCTTGTTTTTGGTATGATAAAAGAGGACATGTTGACATGTCGGAGACAAAGAAGTTCGCATTGGATGATGCATCTGATGTTAAACCCAAAAACCGAGGCTTTTCGCTTTCTTCTGCTTCTTCGGTGCAAGAGAATTTAATTGGAAGAGGTGGGTATGCTGAGGTCTTCAAGGGTCGTCTCAAAGATGGTCAGCTAGTAGCCATAAAACGACTGAACAAAGGAATTGAGGCAAAGAGGAACTCAAACTTCCTAGCTGAGCTAGACGTCATTGCTTTTCTCGACCATCGTAATACAGCCAAGCTTATCGGATGCTGTTCATCTGGAGAACTTTGCCTTGTCTTCCAACTTTCTCCACTAGGAAGTTTAGCATCACTGCTTCATGGTTCTGATAAAGAAAAATTAAATTGGAGTAGAAGGTACAAAATTGCCCTAGGGATAGCTGATGGTCTGCTCTATCTTCACGACCATTGCCATAGGCAAATCATTCATAGAGATATTAAATCTGAGAATATTTTGCTCTCAGAGAACTTTGAGCCACAGATTTGTGATTTTGGGCTTGCAAAGTGGTTGCCAGCAAATGATACTCACCAACTTGCCACAAAGTTTGAAGGGACATTTGGGTATTTTGCTCCTGAATATTTGATGCACGGCATAATAAACGAGAAAACAGATGTTTATTCCTTTGGGATCCTACTTCTAGAGCTTGTAACTGGGCGTAAGGCTTTGGACTATTCGCAACAAAGCATTCTGCTATGGGCAAAGCCTTGGCTAGATGCCAATAATATTAAGGAGCTCATTGATCCTTCTCTTGGTGATAATTATAACCGCGCTCAGGTGGAACGTGTTGTTTTGACTTTATCTCTGTGTGTTGAGCATTCTCCTATTTTACGTCCCCGCATGAACCAGGCAAGTGTTGTGGTACTACTAAGAGGTGATGACTTTATCGTGGAATTTGGAAATGGAAGCCCAAGGCGGTACCTGCCTATAACACACCCAGAACCAGAGGAGTCACAGGATGGCAGAGAAATAGAATGCGGTTGA 1068 0.4242 MANDSHKRYSCFWYDKRGHVDMSETKKFALDDASDVKPKNRGFSLSSASSVQENLIGRGGYAEVFKGRLKDGQLVAIKRLNKGIEAKRNSNFLAELDVIAFLDHRNTAKLIGCCSSGELCLVFQLSPLGSLASLLHGSDKEKLNWSRRYKIALGIADGLLYLHDHCHRQIIHRDIKSENILLSENFEPQICDFGLAKWLPANDTHQLATKFEGTFGYFAPEYLMHGIINEKTDVYSFGILLLELVTGRKALDYSQQSILLWAKPWLDANNIKELIDPSLGDNYNRAQVERVVLTLSLCVEHSPILRPRMNQASVVVLLRGDDFIVEFGNGSPRRYLPITHPEPEESQDGREIECG* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3418 355 ProSitePatterns Protein kinases ATP-binding region signature. 56 78 IPR017441 GO:0005524
Dod01g3418 355 MobiDBLite consensus disorder prediction 335 355 - -
Dod01g3418 355 Gene3D Phosphorylase Kinase; domain 1 16 125 - -
Dod01g3418 355 Gene3D Transferase(Phosphotransferase) domain 1 127 319 - -
Dod01g3418 355 SUPERFAMILY Protein kinase-like (PK-like) 52 313 IPR011009 -
Dod01g3418 355 SMART serkin_6 50 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod01g3418 355 PANTHER OS08G0249100 PROTEIN 48 340 - -
Dod01g3418 355 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-KINASE 48 340 - -
Dod01g3418 355 ProSiteProfiles Protein kinase domain profile. 50 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod01g3418 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
Dod01g3418 355 MobiDBLite consensus disorder prediction 338 355 - -
Dod01g3418 355 Pfam Protein tyrosine and serine/threonine kinase 53 311 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3418 Dod-Chr1 75342004 75346471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3418 53 321 Receptor kinase-like Gene Family AT1G60800 46.570 1.35e-71 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Dod01g3418 PK_Tyr_Ser-Thr 8.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3418 - - gmx:100781529 418.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2370 01 62302319 62306217 Dod01g3418 01 75342004 75346471 ECH
Dod07g0499 07 6564139 6569020 Dod01g3418 01 75342004 75346471 ECH
Dod05g2751 05 53578370 53580513 Dod01g3418 01 75342004 75346471 ECH
Dod03g0747 03 9258090 9262407 Dod01g3418 01 75342004 75346471 ECH
Dod01g3418 01 75342004 75346471 Dod01g3418 01 75342004 75346471 ECH
Dod01g3418 01 75342004 75346471 Dod06g1725 06 23666832 23670525 PCT