Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3401 ATGTGTTTGCCCGAGGGAGAGCAAGATAGGGAGAGAGCCATGGCGCTAGAAGCTGTGCTATATGCACAACAACCTCATGACCCATTTGGTAGTAATAATTATGGAATAATCAACAAGGACCTCTACAACTACAACTACAACTACAACTACGACTCGTTACTAACATCAAGCAACTGGGGCTATGGTGATGATTTCAACCTCGAAAAAGAACAAGAGCAAGGCTCTCTGAGTTTCCTCGAGAATAATAACCAAACGGAGATTTTTCATCATCCTTATGAAGAATGGAACAATAGTCGCTCTCCACAACCGCCACCACCAATGTTGCCCCACCTGATGAATAACAACGTCTCCAACTCTTCCAACCCGTGTTTGGAGGAGGAAGTCACTGATGAACCCAGCAACACACAGAATAATAACAACTACTTGGAAAGCTCAACTTCGACAGTGGCGCGTCCCAAGAGGCGCAGAGCCAAGAGCAGAAAGAACAAGGAAGAGATCGAGAACCAGAGAATGACTCACATTGCTGTCGAGCGCAACCGAAGAAAGCAAATGAATGAGTATCTCTCTGTGCTTCGCTCTCTCATGCCTGACTCGTATGTCCAAAGGGGTGATCAAGCATCTATAATTGGAGGTGCCATTAACTATGTGAAGGAGCTTGAGCAGAGGCTGCAGTTCTTTGGTGCTCAGAAAGAAACCGAGGGTGGATCTGATGATGCAGCTGCAAATATGCCCTTTTCCGAGTTCTTTGCCTTTCCACAGTACTCATCCTCAACGAGTGGTGGTGGCGGTGGTGAAAGTTCTGCGGCCATGGATGAGGGAGTGACCGAGGTTCAGCCAGCAATTGGCATTGCAGATATAGAAGTGACAATGGTGGAGAGCCATGCAAATCTCAAGATTAGGTCCAAGAAACGGCCAAAGCAGCTTTTGAAGATGGTCTCTAGTTTGCATGGCATGCGCCTCACCATACTACACCTAAATGTCACCACCAATGGGGATATTGTCCTCTACTCTCTCAGCGTTAAGGTGGAAGATGATTGCAAGCTGGGATCAGTGGATGAGATAGCCGCAGCTGTGTACCAAATGCTGGATAGGATTCAACAAGAGGCAATATAA 1113 0.4681 MCLPEGEQDRERAMALEAVLYAQQPHDPFGSNNYGIINKDLYNYNYNYNYDSLLTSSNWGYGDDFNLEKEQEQGSLSFLENNNQTEIFHHPYEEWNNSRSPQPPPPMLPHLMNNNVSNSSNPCLEEEVTDEPSNTQNNNNYLESSTSTVARPKRRRAKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINYVKELEQRLQFFGAQKETEGGSDDAAANMPFSEFFAFPQYSSSTSGGGGGESSAAMDEGVTEVQPAIGIADIEVTMVESHANLKIRSKKRPKQLLKMVSSLHGMRLTILHLNVTTNGDIVLYSLSVKVEDDCKLGSVDEIAAAVYQMLDRIQQEAI* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3401 370 Pfam Helix-loop-helix DNA-binding domain 169 220 IPR011598 GO:0046983
Dod01g3401 370 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 219 IPR011598 GO:0046983
Dod01g3401 370 SMART finulus 174 225 IPR011598 GO:0046983
Dod01g3401 370 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 14 370 - -
Dod01g3401 370 Gene3D - 153 233 IPR036638 GO:0046983
Dod01g3401 370 MobiDBLite consensus disorder prediction 94 165 - -
Dod01g3401 370 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 231 IPR036638 GO:0046983
Dod01g3401 370 MobiDBLite consensus disorder prediction 111 148 - -
Dod01g3401 370 PANTHER MAX DIMERIZATION, MAD 14 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3401 Dod-Chr1 75210677 75212372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3401 159 342 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 61.340 3.81e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod01g3401 HLH 4.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3401 - - gmx:100782243 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3401 01 75210677 75212372 Dod01g3401 01 75210677 75212372 ECH
Dod01g3401 01 75210677 75212372 Dod06g1735 06 23780761 23783222 PCT