Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3400 ATGAAAAAGGAAAAGTGCCTATGCTTCTTCATCCTCTTCTTAATACCTCTATCCGTTGCGCAAGCACAAAACAACGATGACCCTGACCCTAACTACCAGCAGCAGTTCAACCCTTCCTTAGCCATAATCATTGTAATCCTAGTCGCAGCTCTTTTCCTCATGGGATTCTTCTCCATCTACATCCGCCAGTGCGCCGATTCCCCTTCCAGCAGCATGCTCCCCGCCGCCGCCACCGGCAGGTCGAGGAGGGGGGCGCGTGGCCTTGACCCGGCAGTCATCGAGACGTTCCCGATCCTCGAGTACTCCGAGGTCAAGATCCACAAGATAGGAAAGGAGGTGCTGGAATGCGCGGTGTGCTTATGCGAGTTCGAAGACACCGAAACGCTGCGTTTGATCCCGAAGTGCGATCACGTGTTCCACCCGGAGTGCATCGACGAGTGGCTTGGTTCCCACACAACGTGCCCCGTCTGCCGAGCCAACCTCGTACCACAACCCGGCGAGTCCGTCCACGCGCTCCCGCTCGTCCCAAACCCCAACGCGCACGACATCGAGGCGCAAAACGACGCCGTTGAGACCGCGCCAGAACAACAACAACAGATTAACGCGGACGCTGAGAGATCCTTGTCGGAGCCAGAGTCTGGTGTGCTGGAGAAAAGTAGGACGCTGAACCGGAACCGCACGCGGGGGTCCCGGTCGAGCCGGAGGCGGCGGTTCCCTCGGTCTCACTCGACCGGTCACTCGCTGGTCCAACCGGGCGAGAACACGGACCGGTTCACTTTGAAACTGCCTGCGGGAGTGAGGAGGGAGATAATGAACCGGGAGTTGCAACGGGCGAACAGCTTGGTTGTGTTGCCTAGGGAGGGTAGTTCGAGGGTGGGGCACCAAACCGGAGAGGAAAGTAGTAGGGGCAAGAGTGGGAGGCGGTTGGACCGGAGCTTTAAATCGGACCGGTGGGTTTTTACGATGGCCCCGCCGTTCTTGGTTCGGGGATCGTCGATTAGGTCCCCGAGGGTTGGTAATAGCGCCGGTGAAGGGACCTCTTCCTCCGCCGCCGTCTCCGACTCCGTCTCCGCCTCCGCCCCTATTATGCCGCCGACGGCTTCTGACTCAGCTCGCCCCCCGGTTTGA 1128 0.5957 MKKEKCLCFFILFLIPLSVAQAQNNDDPDPNYQQQFNPSLAIIIVILVAALFLMGFFSIYIRQCADSPSSSMLPAAATGRSRRGARGLDPAVIETFPILEYSEVKIHKIGKEVLECAVCLCEFEDTETLRLIPKCDHVFHPECIDEWLGSHTTCPVCRANLVPQPGESVHALPLVPNPNAHDIEAQNDAVETAPEQQQQINADAERSLSEPESGVLEKSRTLNRNRTRGSRSSRRRRFPRSHSTGHSLVQPGENTDRFTLKLPAGVRREIMNRELQRANSLVVLPREGSSRVGHQTGEESSRGKSGRRLDRSFKSDRWVFTMAPPFLVRGSSIRSPRVGNSAGEGTSSSAAVSDSVSASAPIMPPTASDSARPPV* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3400 375 SUPERFAMILY RING/U-box 115 165 - -
Dod01g3400 375 MobiDBLite consensus disorder prediction 210 224 - -
Dod01g3400 375 MobiDBLite consensus disorder prediction 190 206 - -
Dod01g3400 375 MobiDBLite consensus disorder prediction 189 256 - -
Dod01g3400 375 Pfam Ring finger domain 115 158 IPR001841 -
Dod01g3400 375 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Dod01g3400 375 PANTHER RING FINGER DOMAIN-CONTAINING 1 309 - -
Dod01g3400 375 CDD RING-H2_EL5_like 115 158 - -
Dod01g3400 375 MobiDBLite consensus disorder prediction 334 364 - -
Dod01g3400 375 MobiDBLite consensus disorder prediction 286 309 - -
Dod01g3400 375 MobiDBLite consensus disorder prediction 330 375 - -
Dod01g3400 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 163 IPR013083 -
Dod01g3400 375 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 309 - -
Dod01g3400 375 MobiDBLite consensus disorder prediction 225 242 - -
Dod01g3400 375 SMART ring_2 116 157 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3400 Dod-Chr1 75167459 75169139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3400 11 372 Rapid Response to Elicitors AT3G05200 44.267 6.55e-88 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3400 K10664 - gmx:100781706 455.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3400 01 75167459 75169139 Dod01g3400 01 75167459 75169139 ECH
Dod01g3400 01 75167459 75169139 Dod06g1736 06 23846118 23848164 PCT