Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3395 ATGGATCATCAAGGGCATAGCCAGAACCCACCTATGGGTGTTGTCGGTAGTGGGGCTCAACTAACGTATGGTTCTAATCCGTATCAGCCAAGCCAAATAACTGGAGCACCAGGGTCGGTCGTTACGTCAGTTGGGACCATGCAACCTGCTGGACAAGCTGCAGGAGGTCAGCTGGGACAACATCAACTTGCTTATCAGCACATTCATCAGCAACAACAGCAGCAACTTCAGCAACAGCTCCAATCCTTTTGGGCAAATCAATACCAAGAAATTGAGAAGGTAACTGATTTCAAGAACCACAGCCTCCCATTGGCAAGGATCAAGAAGATTATGAAGGCTGATGAGGATGTTAGGATGATATCAGCTGAGGCACCGGTCATATTTGCAAGGGCCTGTGAAATGTTCATATTAGAGTTAACCCTGCGTTCATGGAATCACACTGAAGAGAACAAAAGGCGAACCCTTCAGAAAAATGATATTGCTGCTGCCATCACAAGGACTGATATCTTTGATTTCTTGGTTGATATTGTGCCTCGTGAGGACCTGAAAGATGAAGTTCTTGCATCAATCCCAAGAGGAACAATGCCTGTGGCAGGGCCAGCTGATGCACTTCCTTATTGCTATATGCCACCACAGCATGCACCCCAAGTTGGAGCTGCCGGTGTCATAATGGGTAAGCCTGTGATGGACCCAAATATGTATGCTCAGCAGCCCCATCCCTACATGGCACCACAAATGTGGCCACAGCCACCGGACCAACGACCACCATCTCCAGATCATTAG 783 0.4802 MDHQGHSQNPPMGVVGSGAQLTYGSNPYQPSQITGAPGSVVTSVGTMQPAGQAAGGQLGQHQLAYQHIHQQQQQQLQQQLQSFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVAGPADALPYCYMPPQHAPQVGAAGVIMGKPVMDPNMYAQQPHPYMAPQMWPQPPDQRPPSPDH* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3395 260 Gene3D Histone, subunit A 63 179 IPR009072 GO:0046982
Dod01g3395 260 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 260 - -
Dod01g3395 260 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 260 - -
Dod01g3395 260 MobiDBLite consensus disorder prediction 243 260 - -
Dod01g3395 260 MobiDBLite consensus disorder prediction 10 27 - -
Dod01g3395 260 Pfam Core histone H2A/H2B/H3/H4 62 164 IPR007125 GO:0003677
Dod01g3395 260 MobiDBLite consensus disorder prediction 1 27 - -
Dod01g3395 260 MobiDBLite consensus disorder prediction 235 260 - -
Dod01g3395 260 SUPERFAMILY Histone-fold 72 173 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3395 Dod-Chr1 75128532 75131398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3395 1 247 CCAAT-HAP5 Transcription Factor Family AT1G08970 62.097 9.59e-89 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Dod01g3395 CBFD_NFYB_HMF 5.8e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3395 K08066 - gmx:100527803 417.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3395 01 75128532 75131398 Dod01g3395 01 75128532 75131398 ECH
Dod01g3395 01 75128532 75131398 Dod06g1741 06 23956349 23958512 PCT