Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3372 ATGTCGGATTCGCAGTCCAATTCAGAGATTTTCAGTGTTCGGATTGTCTCCATCGACTATTACATGGCACCGCCGATAAATGGCGTTGATATCTGTTACAGCAGCTTCCACGGTGGAAAAGTGAAGGAGGTTCCTGTAATCAGAGTTTATGGTTCTACTCCTGCTGGCCAGAAGACTTGCTTGCACATACATCGAGCTTTACCTTATATGTATGTGCCGTGTTCTGATATACCCATTCAAGCGGACCAAGAAGGTGATGCATACACCTATAAGGTAGCTGCTTCTCTTGAGAAAGCCTTGCAGCTTAAAAGTGGTGCTGGTTCAATGAGACAACATGTACATGGCTGCAGCCTTGTACGAGCAAGAAAATTTTATGGTTATCATTCACTTGAGGAGTTATTTGTGAAGATATACCTATATTATCCACAAGATGTCTCCCGTGCAGCTAATCTTCTCTTGGCCAGTGCTGTTCTTGACAAAAGTTTACAGCCTCATGAATCACATATTCCCTTTATTCTTCAGTTTCTGGTTGATTACAACTTGTATGGTATGGGTCATTTACACCTATCAAAGATGAACTTCCGCCATCCCATACCAGAATCTTCTCACCAGAAATTAAATATTTATAGCCAGCATGTAATGGCAGATTCTGGTGCTGATGTATGTTTAAAGTCAAAAATGTGGATATCTTCCACGGTCCCAGTTGATTGGATGTGGTCACCTGCTAGTGAATATGGTGCTTCATCAAATGATAAGCCTTGCTACCCTAAACGCCAAAGCACATGTGAGCTAGAAGGAGATGCTTCTGTAGATGAGATTCTTAATCAACAGTTTAAAATGTATTCGTCACTCTCACAAACATGCTCAGATGTCAAAATGGTTCAGTCACTTGTGCCAATATGGGAGGAACAGCAGAAAAGGACTGGGATTCATGATGCTACTGTGCCTCCTGATCCTGGAAAACCACTTCCAGAAGATGTTATGAAACTTCTTTCTGTTGGTCTTGACTTTGAGAAAAAGCTTCTTGAATTGTGCAGTGAAGCTGAAACCACCGTGTCTTTTACTCCTTCTCAGAAGGAGTTAAGAGAAACAGACATAATAGGCTCGGCATCGCCACCATGTTCATTAAGTGAAGATGCCAAATTAAACGAAGGACTGACCGGCAGGAGTCTCAAATTGTTAACTGTTGACAGAATGCAATCATCTGAAATAATTGGAGCATCGGACATAAAGGCTGCAGATAGGGAAGCACAACATCTTCTCAAGTGGCTTGCAACTTCTCAAGCTGCGGAAGATATAAACTCTGATGATGAACTTGCTTGTGAAACAATCTTGAGTCCCTTGTTACCAGCTGCAACAATTGATAAGGTGCTAGAGAAAGCTAATTTGGCGTTTGAGAGTGAGTCCCAGAAGGAATGTCAGGATATACTAGATTCAATTGACGGTATGCTTGAGTTGGAGTTATCTAAGGAAAAGCCAGATTGTTCCTTTGGTCTCAGTCATCCTATTGAAGAGTCATCTAAGAGTATGATACCCCAAGTTGATGGTTCAGCTGATGATGAATTCTCAATTCCATGTGCTAGTTTAGCTGGAACCTCTTCTGCAGTAGAGGTAAATAGTGAATCCAAAAGGCCATCTGAATACCATGTACTGCACAGTACTGGTACAGGTACAGTTAGTAAAGATAAAAGGAGTAAACAATGGGGGTCTTTGCCTTTTTCAATGACTGATAAGGCTAATAACAGAGGAGGACATGCTACTTTGCATGAGGATTGTCCATTTGAAAGTCAAGCTGGAGATTCTACTGAAACAGGATACTTGACCAGCAATGGGGTTAGAGATAGTGCTTGTATTACAAGAAATGTGTGCAGAAGTGCTTCAGAATTAAAAGAACAGAGATTGGTTAACTGCTCCTTGCGGGATTTGATGAGGCGAAAGCGATCCTATCGAGTAGAACAAAATGAATGTGTGTCTGGAACAACTAAAAGGCTTCTTTTAGACAAGCACGAGGGACCAAATACATGCCTTGGGGAGAAACAAATTGTTTTGAAAACAGTGCAAAGCGATGAGGAAGAAAAAGAACTCCTGAAAAATTGTGATCTTAAAGTGAGAAATCATGATAATTTAGAGTGTGGGAATCCTCCACTTCCTGACGGTAATGATGATTTTGTTCAAGATGATAGGCCAAAAGATGAATGTTTTGTTCAAACTGAAATTGAGGGTCTAGAAACAAGTATGTTGTTAAGGAACTCTGCAAATCAAGGTTCTTTAGTGTGTCAAGGGCCAGGCCTCTCTAAGCCTGAAAATTTGTATTTCAGTGATTTCATTGCTCACTCTGAGGCTTCCAAGGGTAAAAACCATAAAGCTGACACAGCTTATGCAAAGCCTGTATCTTCTGATGTCTACACCCCAAGTGCCTTTTCAGACGTTAATTTTTTTAGAACAAATTTCGATCATAAAATTAGAGCTCCTGCGAGGCATCAGCATACAGATTCCGCAGCTTCAAGCAGTGTAAAGAGCTCATCCATTGATGATAAAGTTTCTGGCAAACATAATTACATGGATCAAGGTTCTCATGCATCTTTCATGCAACAAGAACAGGTGATGTTTTATGAGAGTTCTATGGGAAAAAGTGCTGCAAGTGCATGCTTGCATAGTGAAAGAGTTGGTAATCAAAAGCGTGATGAAAATTTACTGCATGATACTATTGGCTCAGAATCCGTTGTTGATGACCTGAAGGGTAATCACATGAAATTAACTGGAATAACCAAAGGCAAGAAAGCCCCCTTGGCTGATGAGAATCTTGAAAGTAATTTGTCCATGCCAACCATCTCTAATACCCATTTACAGTTGGATGAGGAAAGCTTTGGTGAAATGTCAGGGAATGTACTGGATGTTTTTCTTCCCATTTCTGCAAAGGATTCCCATGAAGAGATGGAAACTCGGAATACCTGTGTTACAATTAAAGCTCTTCAATCTCGTGGGACAAAGGATGTTGCCACTCACTATAAAAATGATGGCTCTCACCTATACCTGTTAACACCTAATATTTTGCCTCCTTCCGTGAATAGTGTCCATAGATGGCTATTTCGCGACAAAAGAGATCAAATGTGTCAAGAAACTGATGTAGAGGCCAATGAGCATGGATGCGCTTCTGGTCCTACTCTTAGGCCTAAGCCTTCTGACGATGATAGTGCGGAAAAGAAACCACCATGCACTAGTGGTGGACAAACAGAAAGAGTAAAGGTATGCCTAGATGGCTCACAAGATGAATCCCAGATATCAGGCCCTATTAGGAAATCGGGTTCTACCCCGTTGAGTCAAATCGGGTTTCGAGACCCTGCAAGTGTTGGATGTGGACAGCAATTGACATTACTTAGTATAGAGGTTCTTGCCGAATCAAGAGAAGACCTTTTACCTGACCCTCGGTTCGATGGCATCAACATTGTAGCTCTTGGTTTTCAGAATGACAGTGATTCTTTTGTTGAAATTCTTGTTCTTATGCATAGTAAATTTGAACCTTGTCAGAGAAGTTTTGATGGCCTATCAGGCTGCAAAGTATTGGTCTTTTCTGATGAAAAGCTCTTGTTAAAGGAATTTATAAAGATTGTGTCTTCATCTGACCCAGATATTTTGATGGGTTGGGATATTCAAGGGGGTTCTCTTGGTTTTCTAGCGGAAAGGGCTTCGCATATAGGGATAGGATTACTAAATAGTTTGTCACGGACTCCATCAGATTCTTGGTTTGCTTCTGAAGATATCGAAACTTCTGAAAATGGTATCTTGGAACTGAATGACTCTGATACCCCTAGTGCAGATTCTTCTGTACAAGAAAGTTCAATAATTGAGGATGAATGGGGCCGGACACATGCAAGTGGAGTACATGTAGGTGGCAGAGTTGTCCTTAATGTATGGCGGCTAATTCGTGGAGAAGTTAAGCTGAATTTATATTCAGTTGAAGCAGTAACTGAAGCTGTACTGAGGCGGAAAATTCCTTTAATTCACAACAAGGTGCTGACAAAATGGTTTTCAAGTGGTCCTGGACGAGCAAGATATCAATGTATCAAATATGTTATGGAAAGAGCAAAGCTAAACCTTGAGATATTAAACCAACTTGATGTGGTGAATCGAACATCAGAACTTGCTCGTGTCTTTGGCATAGACTTTTTTTCTGTTCTCTCTCGTGGCTCTCAATACCGGGTTGAATCCATGTTTTTGAGGTTGGCCCATACACAGAACTATCTTGCTATCTCGCCTGGAAATCAACAGGTTGCTTCTCAACCTGCCATGGAGTGCCTACCCCTAGTGATGGAACCAGCATCAGGATTTTACTCAGATCCTGTTGTTGTATTTGACTTCCAGTCTTTATATCCATCCATGATAATTGCATACAACCTTTGCTTTTGCACATGTCTTGGCAAAGTTGTGGCTTCGAAGACTAACACGCTTGGGGTTAGTTCATTTTCACCAGAGCAGCATGTTCTTCAAGATTTGAAAGAACAAATATTGCTTACTCCAAATGGTGTTATGTTTGTACCTTCTAAGGTTCGCAGAGGTGTACTTCCCCGCTTGCTGGAAGAGATCTTGTCAACCAGAATCATGGTGAAACAGGCAATTAAAAAGTTGGCTCCTTCAGAGCAAGTTCTGCAGCGGATATTTAATGCAAGACAGCTTGCGTTGAAGCTCATATCAAATGTAACATATGGTTACACTGCTGCTGGATTCAGTGGTCGCATGCCTTGTGCAGAACTTGCAGACAGTATTGTTCAATGTGGCCGTAGTACACTGGAAAAGGCTATATCTTTTGTAAATCTACACGAAAAGTGGAATGCTAAAGTTATTTATGGAGATACTGATAGTATGTTTGTCCTTCTTGAAGGACGCACTATCAAAGAATCCTTCCAAATTGGGAGTGAGATTGCTTCTGCAATCACTGCTATGAATCCTAGTCCTGTCACCCTGAAGATGGAGAAAGTTTATCACCCTTGTTTCCTCCTAACTAAGAAGCGATATGTTGGCTACAGTTATGAAAGTCCCGATCAAATTAAACCTGTTTTTGATGCTAAAGGTATTGAGACAGTTCGCAGGGACACATGTGGTGCAGTTGCAAAAATAATGGAGCAGTCGTTGAGACTCTTTTTTGAGCATCAGAATTTATTGGAGGTGAAGACTTACTTGCAACGTCAGTGGAAGAGGATCCTTTCTGGAAGATTCTCCCTGAAAGATTTCATCTTTGCAAAAGAGGTTCGCTTGGGTACCTACAGTGCGAGGATCTCATCACTTCCTCCTGCTGCAATTGTGGCCACGAAGGCAATGAGGGTCGATCCTAGGGCAGAACCACGATATGCTGAGAGAATACCTTATGTTGTAATCCATGGAGAGCCAGGAGCCCGCCTGTCTGATATGGTTGTAGATCCATTGGAAGTTTTGGCATTTGATTCCCCATTTAGAATAAATGATTTATACTACATTAACAAACAAATAATACCAGCCTTACAGCGCGTATTTGGGCTTGTTGGTGCTGACCTGAACCAGTGGTTTTCAGAGGTACCCCGCCCCATAAGAGAAGCTTCTGCAAAACATACATTCTCTTCAAATTTTCATAGAACCAGAATTGATTATTACTATCTCTCGAAACACTGCATACTGTGCGGTGAGTTGGTCCAGGCATCGGCACATTTGTGTAATCAATGCTCTGGAAATGGAGCAGCTGCTGCTACAGCAGTGATTAGTAAAACTTCAAAGTTGGAGCAAGAGATGCAACATCTTGTTTCTATATGTCACCACTGTGGAGGTGGGGATAGGCTTGTCGAAAGTGGTGTGAAGTGTTCGTCCATTGCATGCTCGGTGTTTTACGAGAGGCGGAAAGTTCAGAAAGAACTATTAGCTGCTACCCATGTTGCTGCACAGAAAGGCTTCTATCCGAGATGCATGGTAGAATGGTTCTAA 5949 0.4154 MSDSQSNSEIFSVRIVSIDYYMAPPINGVDICYSSFHGGKVKEVPVIRVYGSTPAGQKTCLHIHRALPYMYVPCSDIPIQADQEGDAYTYKVAASLEKALQLKSGAGSMRQHVHGCSLVRARKFYGYHSLEELFVKIYLYYPQDVSRAANLLLASAVLDKSLQPHESHIPFILQFLVDYNLYGMGHLHLSKMNFRHPIPESSHQKLNIYSQHVMADSGADVCLKSKMWISSTVPVDWMWSPASEYGASSNDKPCYPKRQSTCELEGDASVDEILNQQFKMYSSLSQTCSDVKMVQSLVPIWEEQQKRTGIHDATVPPDPGKPLPEDVMKLLSVGLDFEKKLLELCSEAETTVSFTPSQKELRETDIIGSASPPCSLSEDAKLNEGLTGRSLKLLTVDRMQSSEIIGASDIKAADREAQHLLKWLATSQAAEDINSDDELACETILSPLLPAATIDKVLEKANLAFESESQKECQDILDSIDGMLELELSKEKPDCSFGLSHPIEESSKSMIPQVDGSADDEFSIPCASLAGTSSAVEVNSESKRPSEYHVLHSTGTGTVSKDKRSKQWGSLPFSMTDKANNRGGHATLHEDCPFESQAGDSTETGYLTSNGVRDSACITRNVCRSASELKEQRLVNCSLRDLMRRKRSYRVEQNECVSGTTKRLLLDKHEGPNTCLGEKQIVLKTVQSDEEEKELLKNCDLKVRNHDNLECGNPPLPDGNDDFVQDDRPKDECFVQTEIEGLETSMLLRNSANQGSLVCQGPGLSKPENLYFSDFIAHSEASKGKNHKADTAYAKPVSSDVYTPSAFSDVNFFRTNFDHKIRAPARHQHTDSAASSSVKSSSIDDKVSGKHNYMDQGSHASFMQQEQVMFYESSMGKSAASACLHSERVGNQKRDENLLHDTIGSESVVDDLKGNHMKLTGITKGKKAPLADENLESNLSMPTISNTHLQLDEESFGEMSGNVLDVFLPISAKDSHEEMETRNTCVTIKALQSRGTKDVATHYKNDGSHLYLLTPNILPPSVNSVHRWLFRDKRDQMCQETDVEANEHGCASGPTLRPKPSDDDSAEKKPPCTSGGQTERVKVCLDGSQDESQISGPIRKSGSTPLSQIGFRDPASVGCGQQLTLLSIEVLAESREDLLPDPRFDGINIVALGFQNDSDSFVEILVLMHSKFEPCQRSFDGLSGCKVLVFSDEKLLLKEFIKIVSSSDPDILMGWDIQGGSLGFLAERASHIGIGLLNSLSRTPSDSWFASEDIETSENGILELNDSDTPSADSSVQESSIIEDEWGRTHASGVHVGGRVVLNVWRLIRGEVKLNLYSVEAVTEAVLRRKIPLIHNKVLTKWFSSGPGRARYQCIKYVMERAKLNLEILNQLDVVNRTSELARVFGIDFFSVLSRGSQYRVESMFLRLAHTQNYLAISPGNQQVASQPAMECLPLVMEPASGFYSDPVVVFDFQSLYPSMIIAYNLCFCTCLGKVVASKTNTLGVSSFSPEQHVLQDLKEQILLTPNGVMFVPSKVRRGVLPRLLEEILSTRIMVKQAIKKLAPSEQVLQRIFNARQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNLHEKWNAKVIYGDTDSMFVLLEGRTIKESFQIGSEIASAITAMNPSPVTLKMEKVYHPCFLLTKKRYVGYSYESPDQIKPVFDAKGIETVRRDTCGAVAKIMEQSLRLFFEHQNLLEVKTYLQRQWKRILSGRFSLKDFIFAKEVRLGTYSARISSLPPAAIVATKAMRVDPRAEPRYAERIPYVVIHGEPGARLSDMVVDPLEVLAFDSPFRINDLYYINKQIIPALQRVFGLVGADLNQWFSEVPRPIREASAKHTFSSNFHRTRIDYYYLSKHCILCGELVQASAHLCNQCSGNGAAAATAVISKTSKLEQEMQHLVSICHHCGGGDRLVESGVKCSSIACSVFYERRKVQKELLAATHVAAQKGFYPRCMVEWF* 1983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3372 1982 MobiDBLite consensus disorder prediction 829 843 - -
Dod01g3372 1982 MobiDBLite consensus disorder prediction 552 581 - -
Dod01g3372 1982 MobiDBLite consensus disorder prediction 1040 1080 - -
Dod01g3372 1982 PRINTS DNA-directed DNA-polymerase family B signature 1557 1569 IPR006172 GO:0000166|GO:0003676|GO:0003887
Dod01g3372 1982 PRINTS DNA-directed DNA-polymerase family B signature 1448 1461 IPR006172 GO:0000166|GO:0003676|GO:0003887
Dod01g3372 1982 PRINTS DNA-directed DNA-polymerase family B signature 1613 1621 IPR006172 GO:0000166|GO:0003676|GO:0003887
Dod01g3372 1982 SUPERFAMILY DNA/RNA polymerases 1435 1848 IPR043502 -
Dod01g3372 1982 Gene3D DNA Polymerase, chain B, domain 1 29 196 - -
Dod01g3372 1982 CDD POLBc_zeta 1396 1844 - -
Dod01g3372 1982 MobiDBLite consensus disorder prediction 823 851 - -
Dod01g3372 1982 Pfam C4-type zinc-finger of DNA polymerase delta 1881 1954 IPR025687 -
Dod01g3372 1982 SMART polmehr3 1121 1627 IPR006172 GO:0000166|GO:0003676|GO:0003887
Dod01g3372 1982 Gene3D - 1690 1853 IPR042087 -
Dod01g3372 1982 Gene3D Helix hairpin bin 1514 1574 - -
Dod01g3372 1982 MobiDBLite consensus disorder prediction 552 587 - -
Dod01g3372 1982 CDD DNA_polB_zeta_exo 1120 1370 - -
Dod01g3372 1982 ProSitePatterns DNA polymerase family B signature. 1615 1623 IPR017964 GO:0000166|GO:0003676
Dod01g3372 1982 Gene3D Palm domain of DNA polymerase 1434 1679 IPR023211 -
Dod01g3372 1982 Pfam DNA polymerase family B, exonuclease domain 55 215 IPR006133 -
Dod01g3372 1982 Pfam DNA polymerase family B, exonuclease domain 1134 1265 IPR006133 -
Dod01g3372 1982 SUPERFAMILY Ribonuclease H-like 27 1394 IPR012337 -
Dod01g3372 1982 Pfam DNA polymerase family B 1389 1836 IPR006134 GO:0000166|GO:0003677
Dod01g3372 1982 Gene3D - 1154 1431 IPR036397 GO:0003676
Dod01g3372 1982 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 7 1975 IPR030559 GO:0006281|GO:0016035|GO:0019985
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3372 Dod-Chr1 74982796 74996882 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3372 1125 1964 Core DNA Replication Machinery Family AT5G63960 28.341 1.74e-86 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3372 K02350 - gmx:100777934 2966.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3372 01 74982796 74996882 Dod01g3372 01 74982796 74996882 ECH