Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Dod01g3372 | ATGTCGGATTCGCAGTCCAATTCAGAGATTTTCAGTGTTCGGATTGTCTCCATCGACTATTACATGGCACCGCCGATAAATGGCGTTGATATCTGTTACAGCAGCTTCCACGGTGGAAAAGTGAAGGAGGTTCCTGTAATCAGAGTTTATGGTTCTACTCCTGCTGGCCAGAAGACTTGCTTGCACATACATCGAGCTTTACCTTATATGTATGTGCCGTGTTCTGATATACCCATTCAAGCGGACCAAGAAGGTGATGCATACACCTATAAGGTAGCTGCTTCTCTTGAGAAAGCCTTGCAGCTTAAAAGTGGTGCTGGTTCAATGAGACAACATGTACATGGCTGCAGCCTTGTACGAGCAAGAAAATTTTATGGTTATCATTCACTTGAGGAGTTATTTGTGAAGATATACCTATATTATCCACAAGATGTCTCCCGTGCAGCTAATCTTCTCTTGGCCAGTGCTGTTCTTGACAAAAGTTTACAGCCTCATGAATCACATATTCCCTTTATTCTTCAGTTTCTGGTTGATTACAACTTGTATGGTATGGGTCATTTACACCTATCAAAGATGAACTTCCGCCATCCCATACCAGAATCTTCTCACCAGAAATTAAATATTTATAGCCAGCATGTAATGGCAGATTCTGGTGCTGATGTATGTTTAAAGTCAAAAATGTGGATATCTTCCACGGTCCCAGTTGATTGGATGTGGTCACCTGCTAGTGAATATGGTGCTTCATCAAATGATAAGCCTTGCTACCCTAAACGCCAAAGCACATGTGAGCTAGAAGGAGATGCTTCTGTAGATGAGATTCTTAATCAACAGTTTAAAATGTATTCGTCACTCTCACAAACATGCTCAGATGTCAAAATGGTTCAGTCACTTGTGCCAATATGGGAGGAACAGCAGAAAAGGACTGGGATTCATGATGCTACTGTGCCTCCTGATCCTGGAAAACCACTTCCAGAAGATGTTATGAAACTTCTTTCTGTTGGTCTTGACTTTGAGAAAAAGCTTCTTGAATTGTGCAGTGAAGCTGAAACCACCGTGTCTTTTACTCCTTCTCAGAAGGAGTTAAGAGAAACAGACATAATAGGCTCGGCATCGCCACCATGTTCATTAAGTGAAGATGCCAAATTAAACGAAGGACTGACCGGCAGGAGTCTCAAATTGTTAACTGTTGACAGAATGCAATCATCTGAAATAATTGGAGCATCGGACATAAAGGCTGCAGATAGGGAAGCACAACATCTTCTCAAGTGGCTTGCAACTTCTCAAGCTGCGGAAGATATAAACTCTGATGATGAACTTGCTTGTGAAACAATCTTGAGTCCCTTGTTACCAGCTGCAACAATTGATAAGGTGCTAGAGAAAGCTAATTTGGCGTTTGAGAGTGAGTCCCAGAAGGAATGTCAGGATATACTAGATTCAATTGACGGTATGCTTGAGTTGGAGTTATCTAAGGAAAAGCCAGATTGTTCCTTTGGTCTCAGTCATCCTATTGAAGAGTCATCTAAGAGTATGATACCCCAAGTTGATGGTTCAGCTGATGATGAATTCTCAATTCCATGTGCTAGTTTAGCTGGAACCTCTTCTGCAGTAGAGGTAAATAGTGAATCCAAAAGGCCATCTGAATACCATGTACTGCACAGTACTGGTACAGGTACAGTTAGTAAAGATAAAAGGAGTAAACAATGGGGGTCTTTGCCTTTTTCAATGACTGATAAGGCTAATAACAGAGGAGGACATGCTACTTTGCATGAGGATTGTCCATTTGAAAGTCAAGCTGGAGATTCTACTGAAACAGGATACTTGACCAGCAATGGGGTTAGAGATAGTGCTTGTATTACAAGAAATGTGTGCAGAAGTGCTTCAGAATTAAAAGAACAGAGATTGGTTAACTGCTCCTTGCGGGATTTGATGAGGCGAAAGCGATCCTATCGAGTAGAACAAAATGAATGTGTGTCTGGAACAACTAAAAGGCTTCTTTTAGACAAGCACGAGGGACCAAATACATGCCTTGGGGAGAAACAAATTGTTTTGAAAACAGTGCAAAGCGATGAGGAAGAAAAAGAACTCCTGAAAAATTGTGATCTTAAAGTGAGAAATCATGATAATTTAGAGTGTGGGAATCCTCCACTTCCTGACGGTAATGATGATTTTGTTCAAGATGATAGGCCAAAAGATGAATGTTTTGTTCAAACTGAAATTGAGGGTCTAGAAACAAGTATGTTGTTAAGGAACTCTGCAAATCAAGGTTCTTTAGTGTGTCAAGGGCCAGGCCTCTCTAAGCCTGAAAATTTGTATTTCAGTGATTTCATTGCTCACTCTGAGGCTTCCAAGGGTAAAAACCATAAAGCTGACACAGCTTATGCAAAGCCTGTATCTTCTGATGTCTACACCCCAAGTGCCTTTTCAGACGTTAATTTTTTTAGAACAAATTTCGATCATAAAATTAGAGCTCCTGCGAGGCATCAGCATACAGATTCCGCAGCTTCAAGCAGTGTAAAGAGCTCATCCATTGATGATAAAGTTTCTGGCAAACATAATTACATGGATCAAGGTTCTCATGCATCTTTCATGCAACAAGAACAGGTGATGTTTTATGAGAGTTCTATGGGAAAAAGTGCTGCAAGTGCATGCTTGCATAGTGAAAGAGTTGGTAATCAAAAGCGTGATGAAAATTTACTGCATGATACTATTGGCTCAGAATCCGTTGTTGATGACCTGAAGGGTAATCACATGAAATTAACTGGAATAACCAAAGGCAAGAAAGCCCCCTTGGCTGATGAGAATCTTGAAAGTAATTTGTCCATGCCAACCATCTCTAATACCCATTTACAGTTGGATGAGGAAAGCTTTGGTGAAATGTCAGGGAATGTACTGGATGTTTTTCTTCCCATTTCTGCAAAGGATTCCCATGAAGAGATGGAAACTCGGAATACCTGTGTTACAATTAAAGCTCTTCAATCTCGTGGGACAAAGGATGTTGCCACTCACTATAAAAATGATGGCTCTCACCTATACCTGTTAACACCTAATATTTTGCCTCCTTCCGTGAATAGTGTCCATAGATGGCTATTTCGCGACAAAAGAGATCAAATGTGTCAAGAAACTGATGTAGAGGCCAATGAGCATGGATGCGCTTCTGGTCCTACTCTTAGGCCTAAGCCTTCTGACGATGATAGTGCGGAAAAGAAACCACCATGCACTAGTGGTGGACAAACAGAAAGAGTAAAGGTATGCCTAGATGGCTCACAAGATGAATCCCAGATATCAGGCCCTATTAGGAAATCGGGTTCTACCCCGTTGAGTCAAATCGGGTTTCGAGACCCTGCAAGTGTTGGATGTGGACAGCAATTGACATTACTTAGTATAGAGGTTCTTGCCGAATCAAGAGAAGACCTTTTACCTGACCCTCGGTTCGATGGCATCAACATTGTAGCTCTTGGTTTTCAGAATGACAGTGATTCTTTTGTTGAAATTCTTGTTCTTATGCATAGTAAATTTGAACCTTGTCAGAGAAGTTTTGATGGCCTATCAGGCTGCAAAGTATTGGTCTTTTCTGATGAAAAGCTCTTGTTAAAGGAATTTATAAAGATTGTGTCTTCATCTGACCCAGATATTTTGATGGGTTGGGATATTCAAGGGGGTTCTCTTGGTTTTCTAGCGGAAAGGGCTTCGCATATAGGGATAGGATTACTAAATAGTTTGTCACGGACTCCATCAGATTCTTGGTTTGCTTCTGAAGATATCGAAACTTCTGAAAATGGTATCTTGGAACTGAATGACTCTGATACCCCTAGTGCAGATTCTTCTGTACAAGAAAGTTCAATAATTGAGGATGAATGGGGCCGGACACATGCAAGTGGAGTACATGTAGGTGGCAGAGTTGTCCTTAATGTATGGCGGCTAATTCGTGGAGAAGTTAAGCTGAATTTATATTCAGTTGAAGCAGTAACTGAAGCTGTACTGAGGCGGAAAATTCCTTTAATTCACAACAAGGTGCTGACAAAATGGTTTTCAAGTGGTCCTGGACGAGCAAGATATCAATGTATCAAATATGTTATGGAAAGAGCAAAGCTAAACCTTGAGATATTAAACCAACTTGATGTGGTGAATCGAACATCAGAACTTGCTCGTGTCTTTGGCATAGACTTTTTTTCTGTTCTCTCTCGTGGCTCTCAATACCGGGTTGAATCCATGTTTTTGAGGTTGGCCCATACACAGAACTATCTTGCTATCTCGCCTGGAAATCAACAGGTTGCTTCTCAACCTGCCATGGAGTGCCTACCCCTAGTGATGGAACCAGCATCAGGATTTTACTCAGATCCTGTTGTTGTATTTGACTTCCAGTCTTTATATCCATCCATGATAATTGCATACAACCTTTGCTTTTGCACATGTCTTGGCAAAGTTGTGGCTTCGAAGACTAACACGCTTGGGGTTAGTTCATTTTCACCAGAGCAGCATGTTCTTCAAGATTTGAAAGAACAAATATTGCTTACTCCAAATGGTGTTATGTTTGTACCTTCTAAGGTTCGCAGAGGTGTACTTCCCCGCTTGCTGGAAGAGATCTTGTCAACCAGAATCATGGTGAAACAGGCAATTAAAAAGTTGGCTCCTTCAGAGCAAGTTCTGCAGCGGATATTTAATGCAAGACAGCTTGCGTTGAAGCTCATATCAAATGTAACATATGGTTACACTGCTGCTGGATTCAGTGGTCGCATGCCTTGTGCAGAACTTGCAGACAGTATTGTTCAATGTGGCCGTAGTACACTGGAAAAGGCTATATCTTTTGTAAATCTACACGAAAAGTGGAATGCTAAAGTTATTTATGGAGATACTGATAGTATGTTTGTCCTTCTTGAAGGACGCACTATCAAAGAATCCTTCCAAATTGGGAGTGAGATTGCTTCTGCAATCACTGCTATGAATCCTAGTCCTGTCACCCTGAAGATGGAGAAAGTTTATCACCCTTGTTTCCTCCTAACTAAGAAGCGATATGTTGGCTACAGTTATGAAAGTCCCGATCAAATTAAACCTGTTTTTGATGCTAAAGGTATTGAGACAGTTCGCAGGGACACATGTGGTGCAGTTGCAAAAATAATGGAGCAGTCGTTGAGACTCTTTTTTGAGCATCAGAATTTATTGGAGGTGAAGACTTACTTGCAACGTCAGTGGAAGAGGATCCTTTCTGGAAGATTCTCCCTGAAAGATTTCATCTTTGCAAAAGAGGTTCGCTTGGGTACCTACAGTGCGAGGATCTCATCACTTCCTCCTGCTGCAATTGTGGCCACGAAGGCAATGAGGGTCGATCCTAGGGCAGAACCACGATATGCTGAGAGAATACCTTATGTTGTAATCCATGGAGAGCCAGGAGCCCGCCTGTCTGATATGGTTGTAGATCCATTGGAAGTTTTGGCATTTGATTCCCCATTTAGAATAAATGATTTATACTACATTAACAAACAAATAATACCAGCCTTACAGCGCGTATTTGGGCTTGTTGGTGCTGACCTGAACCAGTGGTTTTCAGAGGTACCCCGCCCCATAAGAGAAGCTTCTGCAAAACATACATTCTCTTCAAATTTTCATAGAACCAGAATTGATTATTACTATCTCTCGAAACACTGCATACTGTGCGGTGAGTTGGTCCAGGCATCGGCACATTTGTGTAATCAATGCTCTGGAAATGGAGCAGCTGCTGCTACAGCAGTGATTAGTAAAACTTCAAAGTTGGAGCAAGAGATGCAACATCTTGTTTCTATATGTCACCACTGTGGAGGTGGGGATAGGCTTGTCGAAAGTGGTGTGAAGTGTTCGTCCATTGCATGCTCGGTGTTTTACGAGAGGCGGAAAGTTCAGAAAGAACTATTAGCTGCTACCCATGTTGCTGCACAGAAAGGCTTCTATCCGAGATGCATGGTAGAATGGTTCTAA | 5949 | 0.4154 | MSDSQSNSEIFSVRIVSIDYYMAPPINGVDICYSSFHGGKVKEVPVIRVYGSTPAGQKTCLHIHRALPYMYVPCSDIPIQADQEGDAYTYKVAASLEKALQLKSGAGSMRQHVHGCSLVRARKFYGYHSLEELFVKIYLYYPQDVSRAANLLLASAVLDKSLQPHESHIPFILQFLVDYNLYGMGHLHLSKMNFRHPIPESSHQKLNIYSQHVMADSGADVCLKSKMWISSTVPVDWMWSPASEYGASSNDKPCYPKRQSTCELEGDASVDEILNQQFKMYSSLSQTCSDVKMVQSLVPIWEEQQKRTGIHDATVPPDPGKPLPEDVMKLLSVGLDFEKKLLELCSEAETTVSFTPSQKELRETDIIGSASPPCSLSEDAKLNEGLTGRSLKLLTVDRMQSSEIIGASDIKAADREAQHLLKWLATSQAAEDINSDDELACETILSPLLPAATIDKVLEKANLAFESESQKECQDILDSIDGMLELELSKEKPDCSFGLSHPIEESSKSMIPQVDGSADDEFSIPCASLAGTSSAVEVNSESKRPSEYHVLHSTGTGTVSKDKRSKQWGSLPFSMTDKANNRGGHATLHEDCPFESQAGDSTETGYLTSNGVRDSACITRNVCRSASELKEQRLVNCSLRDLMRRKRSYRVEQNECVSGTTKRLLLDKHEGPNTCLGEKQIVLKTVQSDEEEKELLKNCDLKVRNHDNLECGNPPLPDGNDDFVQDDRPKDECFVQTEIEGLETSMLLRNSANQGSLVCQGPGLSKPENLYFSDFIAHSEASKGKNHKADTAYAKPVSSDVYTPSAFSDVNFFRTNFDHKIRAPARHQHTDSAASSSVKSSSIDDKVSGKHNYMDQGSHASFMQQEQVMFYESSMGKSAASACLHSERVGNQKRDENLLHDTIGSESVVDDLKGNHMKLTGITKGKKAPLADENLESNLSMPTISNTHLQLDEESFGEMSGNVLDVFLPISAKDSHEEMETRNTCVTIKALQSRGTKDVATHYKNDGSHLYLLTPNILPPSVNSVHRWLFRDKRDQMCQETDVEANEHGCASGPTLRPKPSDDDSAEKKPPCTSGGQTERVKVCLDGSQDESQISGPIRKSGSTPLSQIGFRDPASVGCGQQLTLLSIEVLAESREDLLPDPRFDGINIVALGFQNDSDSFVEILVLMHSKFEPCQRSFDGLSGCKVLVFSDEKLLLKEFIKIVSSSDPDILMGWDIQGGSLGFLAERASHIGIGLLNSLSRTPSDSWFASEDIETSENGILELNDSDTPSADSSVQESSIIEDEWGRTHASGVHVGGRVVLNVWRLIRGEVKLNLYSVEAVTEAVLRRKIPLIHNKVLTKWFSSGPGRARYQCIKYVMERAKLNLEILNQLDVVNRTSELARVFGIDFFSVLSRGSQYRVESMFLRLAHTQNYLAISPGNQQVASQPAMECLPLVMEPASGFYSDPVVVFDFQSLYPSMIIAYNLCFCTCLGKVVASKTNTLGVSSFSPEQHVLQDLKEQILLTPNGVMFVPSKVRRGVLPRLLEEILSTRIMVKQAIKKLAPSEQVLQRIFNARQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNLHEKWNAKVIYGDTDSMFVLLEGRTIKESFQIGSEIASAITAMNPSPVTLKMEKVYHPCFLLTKKRYVGYSYESPDQIKPVFDAKGIETVRRDTCGAVAKIMEQSLRLFFEHQNLLEVKTYLQRQWKRILSGRFSLKDFIFAKEVRLGTYSARISSLPPAAIVATKAMRVDPRAEPRYAERIPYVVIHGEPGARLSDMVVDPLEVLAFDSPFRINDLYYINKQIIPALQRVFGLVGADLNQWFSEVPRPIREASAKHTFSSNFHRTRIDYYYLSKHCILCGELVQASAHLCNQCSGNGAAAATAVISKTSKLEQEMQHLVSICHHCGGGDRLVESGVKCSSIACSVFYERRKVQKELLAATHVAAQKGFYPRCMVEWF* | 1983 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Dod01g3372 | 1982 | MobiDBLite | consensus disorder prediction | 829 | 843 | - | - | |
Dod01g3372 | 1982 | MobiDBLite | consensus disorder prediction | 552 | 581 | - | - | |
Dod01g3372 | 1982 | MobiDBLite | consensus disorder prediction | 1040 | 1080 | - | - | |
Dod01g3372 | 1982 | PRINTS | DNA-directed DNA-polymerase family B signature | 1557 | 1569 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
Dod01g3372 | 1982 | PRINTS | DNA-directed DNA-polymerase family B signature | 1448 | 1461 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
Dod01g3372 | 1982 | PRINTS | DNA-directed DNA-polymerase family B signature | 1613 | 1621 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
Dod01g3372 | 1982 | SUPERFAMILY | DNA/RNA polymerases | 1435 | 1848 | IPR043502 | - | |
Dod01g3372 | 1982 | Gene3D | DNA Polymerase, chain B, domain 1 | 29 | 196 | - | - | |
Dod01g3372 | 1982 | CDD | POLBc_zeta | 1396 | 1844 | - | - | |
Dod01g3372 | 1982 | MobiDBLite | consensus disorder prediction | 823 | 851 | - | - | |
Dod01g3372 | 1982 | Pfam | C4-type zinc-finger of DNA polymerase delta | 1881 | 1954 | IPR025687 | - | |
Dod01g3372 | 1982 | SMART | polmehr3 | 1121 | 1627 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
Dod01g3372 | 1982 | Gene3D | - | 1690 | 1853 | IPR042087 | - | |
Dod01g3372 | 1982 | Gene3D | Helix hairpin bin | 1514 | 1574 | - | - | |
Dod01g3372 | 1982 | MobiDBLite | consensus disorder prediction | 552 | 587 | - | - | |
Dod01g3372 | 1982 | CDD | DNA_polB_zeta_exo | 1120 | 1370 | - | - | |
Dod01g3372 | 1982 | ProSitePatterns | DNA polymerase family B signature. | 1615 | 1623 | IPR017964 | GO:0000166|GO:0003676 | |
Dod01g3372 | 1982 | Gene3D | Palm domain of DNA polymerase | 1434 | 1679 | IPR023211 | - | |
Dod01g3372 | 1982 | Pfam | DNA polymerase family B, exonuclease domain | 55 | 215 | IPR006133 | - | |
Dod01g3372 | 1982 | Pfam | DNA polymerase family B, exonuclease domain | 1134 | 1265 | IPR006133 | - | |
Dod01g3372 | 1982 | SUPERFAMILY | Ribonuclease H-like | 27 | 1394 | IPR012337 | - | |
Dod01g3372 | 1982 | Pfam | DNA polymerase family B | 1389 | 1836 | IPR006134 | GO:0000166|GO:0003677 | |
Dod01g3372 | 1982 | Gene3D | - | 1154 | 1431 | IPR036397 | GO:0003676 | |
Dod01g3372 | 1982 | PANTHER | DNA POLYMERASE ZETA CATALYTIC SUBUNIT | 7 | 1975 | IPR030559 | GO:0006281|GO:0016035|GO:0019985 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Dod01g3372 | Dod-Chr1 | 74982796 | 74996882 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Dod01g3372 | 1125 | 1964 | Core DNA Replication Machinery Family | AT5G63960 | 28.341 | 1.74e-86 | 307 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Dod01g3372 | K02350 | - | gmx:100777934 | 2966.02 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Dod01g3372 | 01 | 74982796 | 74996882 | Dod01g3372 | 01 | 74982796 | 74996882 | ECH |