Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3369 ATGGCACCAACAAGGAAACCTAGAAGTATGAATAAGCGATTATCAAGTTTAAATGAGGTCTCTCCTGAGAAAGATGGGGTTAACTCAAGTAAAAATAAGCCACGGAAGAAGAAGTTGTCAGATAAATTGGGATCTCAATGGAACAAAGAGGAACTAGAGCGGTTTTATGAGGCATACAGGAAGTATGGGAAAGACTGGAAGAAGGTGGCTGCAGCTGTACGTAACAGATCTGTTGACATGGTGGAGGCCCTTTACAATATGAACAGGGCTTACCTATCTCTGCCAGAGGGGACAGCTTCTGTTGTTGGTCTCATTGCAATGATGACAGATCACTATAATGTGCTGGAAGAGAGTGATAGTGAAAGGGAGAGCATTGATTCACCTGGATCTCGAAAAACTGTTAAAAGAAAGCGTGGTAAAACTGAGCTTGGTGTCTCCAAAGACTCTGTCCAGTCTCAGTCAATTGCTTCCAATGATGGTTGCCTCTCTCTATTGAAGAGAAGACGCTTTGATGGTAGCCAGCCTCGTGCAGTTGGGAAAAGGACACCTCGCGTGCCGGTTTACTTTAAGAAAGATGACAGGGAAGATTATGTGTCGCCTAATAAAAGAACCCTGAAGTCATCCTTTGATGGTAGCGATGATGAAGTTGCACATGTTGCAGCTCTAGCATTAACTGAGGCTGCAAAAAGAGGTGGCTCTCCCCAAATATCTCAAACACCATACAAAAAGTCAGAGCAGAAGTTCTCACTTATACAGAGCTGGGAAAGAATGCACCAACAGTCGAAGAGAGTTCCTTCGAAGTTTTATGATGCTTCTGTGGCTGAAGAGCGCTTCGAAGGTAGTCGAGAAAGCAGGGGGGCTGAAAATGGAGAACATGCTAGAGATACTAGTTCCTTGATCGATATGGAAGGAAGTGGCACAGTTGAAGTCCATCAGAAAGGGAAAAAAGCATACAGAAAGAAAGAGAGAGTTGAAAATGTTGGAAACCATTTACTTGATGATGGTGGAGAAGCATGTAGTGGCACTGAAGGAGGACTTGACTTTAGTTTGAAGGAAAAGGTTGATATTGAGGTTACAAATGCAAAGCCTCAAAGGAAAAGGAGCAAGAAACTTTTCTTTGGAGATGAAAGCTCATCCTTGAATCCTTTGCAAACTTTGGCTGATCTGTCATTAATGATACCAGAGTCTACAATGGAATCTGAATCATCTGTCAAGCTGAAGGAACAAAGAATGACTGCTGGTAAAGAAGAAAAGTCTGCTGTACCTGCAGCCACATCAGCAAGCCAAAACAGAGATAAAATTAAACTCCCTAGTCTGAAACAAAAGGTTGTTCATTCAGTCCCTGGAGTTGAGGTTTCAACCTCCAAAAAATCTAAACCTGGAAGGGAGACAGTAAATGATAGTGATACTAATGCTCTCTTTGAATCAAAAGAGCAGCTTCCCTCTACCGATAGAGCATGGAAAAGAAAGCGCAAGTCCATGGGTTCAAAGGTAGCACATGCAAAGCATGATTCTTATGCAAATGATCCTTTGAATGAGGAGGCTGTAGATGAAGAGAACAAACCAGTGATTAAGGGAAAGCTCACTGGTCAGACATCCACTCCAACAAAACAATTAAAGTCGGTCAAATCATCAGAAAGTTCTTTGTGTAGTGACCAGAAAGATTTGACTCTATCAACTGCAGAAGTTCCAGTTGTGAGTGAAGTTAGTTTATCAACTAAACGAAGTAGACGTAAAATGAGTATACAGAGAGCATTTATGCCTAAAGAGAAGTCTTCTGAGAACAAAATAAAAAGTCAATCTAATAAGTATTTGACCCCCCTTCAAGATAGGCCATTATTTCTAAAGGAAAAGCTTTCTAGTTGCTTGTCATCTTATATGGTTCGCAGGTGGTGTGCATTCGAATGGTTTTATAGCGCAATTGATTATTTGTGGTTTTCCAAACGGGAGTTCATGGAGTACTTAAATCATGTTGGTCTAGGGAATATCCCAAGGCTAACTCGTGTTGAGTGGAGTGTTATAAAAAGTTCCCTTGGCAAACCTCGCAGGTTTTCTGAACACTTTCTTCGTGAAGAAAGACAAAAGCTTGAACAGTATCGGGAATCTGTTAGGAAACATTATACTGAACTGCGGACTGGTATCAGGGATGGACTTCCAACAGATTTAGCTAAACCTTTGTATGTTGGACAGCGAGTGATTGCCCTTCACCCCAAAACAAGAGAGATTCATGATGGAAGTGTGCTTACAGTTGACCATGACAAGTGCAGGGTTCAGTTTGACCTTCCTGAATTGGGTGTTGAATTTGTCATGGACATTGATTGCATGCCTTTGAATCCATTGGATAATATGCCAGAAGCTCTGAGGAGGCAGATTGGTGCTGGCAAAGTCCCGTGTAGTAAAGAACCACAAATGAATGGAAATTCAAGTTTTGGGGGCTCTCTGACTTGCACTTCTAGTAGACCTGCAGACAAAGCACCCATCGGTTTAAGTACAACGGCAAAGCAGGGAAAGGGGGATAACCACTCCATTGCCCAAACAAAGGCTGCTACTATTGATCAATTCTGTACACAACACGCAATGTGTGCTCAACCATGTACGGTTATGGATCATCAAACTAAGGAAGCTGACATACATGCCCTTTCTGAGCTGACATGCGCTTTAGATAAAAAGGAGAAACTGTTAGTGGAACTTAAAAATGCCAACAATGACATATTGGATAACCAAAATGACACTGACAGCTTTAAAGATTCAGAGGCTTTCAAGAAGCATTACGCAACGGTACTTGTACAGCTTAAGGAAGCCAGTGAACAGGTTTCTAATGCTCTGCTTCATTTGAGGCAAAGAAATACTTACACAGGAAACTCTTTGCCACAATGGATGAAGCCTCAAGCAATTTTCAATGTTCATGATGGCCTTTCCAGTACCTTGGATAGTTCTCCAGCTCGGGAGTTAGGATCAAGTGTTATTGAAATTATCAAAGGATCCAAGCTTAAAGCACATGCCATGGTTGATGCTGCATTTCAGGCATTAGCTTCAATGAAGGAAGGTGAAGATGCTTTCATGAGGATTGGGCAGGTATTGGATTCTATTGATTATCAGCAATTGGCCACCAACTCTTCAATACCTGTGACGAGGTCCCAGGAGCAAGTAAATGGAAGTCTTGATCACCACAGTCGGTCAATTTGCTCTTCATCTGAGCCTTTACTCAATGAAGCATCTGGTCCAAAATTGCATCATGATTCTGACAAAGTTGATACTCAAATTCCTTCGGAGCTGATCACTTCCTGTGTTGCTACATTAATCATGATACAGACTTGTACCGAACGACAATATCCTCCAGCTGATGTGGCTCAGATATTAGATTCTGCTGTTACGAGCCTGCATCCATGCTGTCCACGAAACCTTCCCATTTACAGAGAAATTCAAATGTGCATGGGAAGAATTAAGACCCAGATTTTAGCTCTCATACCCACTTGA 3477 0.4193 MAPTRKPRSMNKRLSSLNEVSPEKDGVNSSKNKPRKKKLSDKLGSQWNKEELERFYEAYRKYGKDWKKVAAAVRNRSVDMVEALYNMNRAYLSLPEGTASVVGLIAMMTDHYNVLEESDSERESIDSPGSRKTVKRKRGKTELGVSKDSVQSQSIASNDGCLSLLKRRRFDGSQPRAVGKRTPRVPVYFKKDDREDYVSPNKRTLKSSFDGSDDEVAHVAALALTEAAKRGGSPQISQTPYKKSEQKFSLIQSWERMHQQSKRVPSKFYDASVAEERFEGSRESRGAENGEHARDTSSLIDMEGSGTVEVHQKGKKAYRKKERVENVGNHLLDDGGEACSGTEGGLDFSLKEKVDIEVTNAKPQRKRSKKLFFGDESSSLNPLQTLADLSLMIPESTMESESSVKLKEQRMTAGKEEKSAVPAATSASQNRDKIKLPSLKQKVVHSVPGVEVSTSKKSKPGRETVNDSDTNALFESKEQLPSTDRAWKRKRKSMGSKVAHAKHDSYANDPLNEEAVDEENKPVIKGKLTGQTSTPTKQLKSVKSSESSLCSDQKDLTLSTAEVPVVSEVSLSTKRSRRKMSIQRAFMPKEKSSENKIKSQSNKYLTPLQDRPLFLKEKLSSCLSSYMVRRWCAFEWFYSAIDYLWFSKREFMEYLNHVGLGNIPRLTRVEWSVIKSSLGKPRRFSEHFLREERQKLEQYRESVRKHYTELRTGIRDGLPTDLAKPLYVGQRVIALHPKTREIHDGSVLTVDHDKCRVQFDLPELGVEFVMDIDCMPLNPLDNMPEALRRQIGAGKVPCSKEPQMNGNSSFGGSLTCTSSRPADKAPIGLSTTAKQGKGDNHSIAQTKAATIDQFCTQHAMCAQPCTVMDHQTKEADIHALSELTCALDKKEKLLVELKNANNDILDNQNDTDSFKDSEAFKKHYATVLVQLKEASEQVSNALLHLRQRNTYTGNSLPQWMKPQAIFNVHDGLSSTLDSSPARELGSSVIEIIKGSKLKAHAMVDAAFQALASMKEGEDAFMRIGQVLDSIDYQQLATNSSIPVTRSQEQVNGSLDHHSRSICSSSEPLLNEASGPKLHHDSDKVDTQIPSELITSCVATLIMIQTCTERQYPPADVAQILDSAVTSLHPCCPRNLPIYREIQMCMGRIKTQILALIPT* 1159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3369 1158 SUPERFAMILY Homeodomain-like 41 90 IPR009057 -
Dod01g3369 1158 MobiDBLite consensus disorder prediction 498 524 - -
Dod01g3369 1158 Gene3D - 3 99 - -
Dod01g3369 1158 PANTHER LIN-9 1 1158 IPR010561 GO:0006351|GO:0017053
Dod01g3369 1158 MobiDBLite consensus disorder prediction 116 132 - -
Dod01g3369 1158 MobiDBLite consensus disorder prediction 397 545 - -
Dod01g3369 1158 Coils Coil 689 709 - -
Dod01g3369 1158 MobiDBLite consensus disorder prediction 26 44 - -
Dod01g3369 1158 ProSiteProfiles SANT domain profile. 42 79 IPR017884 -
Dod01g3369 1158 MobiDBLite consensus disorder prediction 526 545 - -
Dod01g3369 1158 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 77 IPR017930 -
Dod01g3369 1158 SMART DIRP_2 637 738 IPR033471 -
Dod01g3369 1158 Coils Coil 928 948 - -
Dod01g3369 1158 MobiDBLite consensus disorder prediction 278 298 - -
Dod01g3369 1158 MobiDBLite consensus disorder prediction 401 415 - -
Dod01g3369 1158 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 1 1158 IPR028306 -
Dod01g3369 1158 Coils Coil 880 910 - -
Dod01g3369 1158 SMART sant 43 91 IPR001005 -
Dod01g3369 1158 Pfam Myb-like DNA-binding domain 45 81 IPR001005 -
Dod01g3369 1158 CDD SANT 47 81 IPR001005 -
Dod01g3369 1158 MobiDBLite consensus disorder prediction 116 151 - -
Dod01g3369 1158 Pfam DIRP 636 737 IPR033471 -
Dod01g3369 1158 MobiDBLite consensus disorder prediction 9 25 - -
Dod01g3369 1158 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3369 Dod-Chr1 74965026 74972839 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dod01g3369 DIRP 2.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3369 - - gmx:100816217 1546.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3369 01 74965026 74972839 Dod01g3369 01 74965026 74972839 ECH