Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3366 ATGTCAAACATCACGAGTTGTGATAGTGGCAGCTTCTCTACAGATAACACTACAAGAGGAGATGCAGTGAAACAACAACCAGATATACTAGGCCAGTTCCATAGCTCAAATTCTCATTCTTCATCTATAACAAATAATAGCCATGGCTCCAACACAAATTCACAACCACCTCCACCTGCTAAGAAGAAAAGGAGTCTACCAGGAAATCCAGATCCAAGTGCTGAAGTGATTGCTCTATCGCCAAACACACTCGTGGCCACAAACAGGTTCATATGTGAAATATGCAACAAAGGGTTTCAAAGGGATCAAAACCTTCAACTGCACCGGCGAGGCCATAACCTGCCATGGAAGCTCAAACAGAGAACAAACACAGAAGTTCGAAAGCGGGTTTATGTTTGCCCAGAGCCCTCATGTGTCCACCACAACCCTGCTCGAGCACTGGGTGATCTCACTGGCATTAAAAAGCATTTTAGCAGAAAGCACGGCGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAGAAATACGCCGTCCAATCTGACTGGAAAGCACATTCAAAAATCTGTGGTACAAAGGAATACAAATGTGACTGTGGCACCATCTTTTCCAGGAGGGATAGCTTCATTACCCACAGAGCTTTCTGTGACGCACTGAGTGACGAGAATAACAAAGCCAACAATGATGGACAATTATTGCCAAATATTGGTTCCAACTTATTGCAGGGTCAACCAATTCCAAACCTAATTGCATCATCATTACCGATCAATACCATAAATCGCAATAATCCACAGAATATTGCCACGTCAGAGTTCAAACACTCGGATCACAAGTACCCATTATCTTCACTCCCTAGCTCCCTCATGCCAATGCCTACAAAACCACCTTTCAACAATAACATGCCCTCAGGAACCACATTCACGAGAAGCCTTTCACCCAACCCTTCTGCACCCTCTCTACAACTGAGTTCAAACTCACTGAACATGTTGGAAGAAAATGGGTTCCATTTAGCTGCAGGGTTTTCTCCAATGTCAGCCACATCATTGCTGCAAAAAGCTGCACAAATGGGTGCAACCATGGGTAATAATACTGCTAGTAGCGGTTTAGCGGAAAAGAGTTTTGTGATGACAAGCATGACACCCCAATCATTGATCGGTTCTGTACCATCAAATGGGATCATGGAACAGTATATTCACAATGCTCATCAACAGGACATAATTAATTCGTCTCATGATCAGTATAGTAATTTCAATGTGAATGGGATGGTGGGAATGAATGGTGTGGACGTGTTTAATGCTATATTGGATCAGAGTAAGGCCTTGTCGAAGATCATAGAGCAGAACAACAGTAGAAGCAGTAATGATGTTCTGCATGGTGGATGCACAATGAATGGGAGGCCTAGTAGCAGCATCAATATTGGTGGAACTAAAGGAAGTAGTGATCAGGATGTGATGACTTTGGACCTGTTGGGGATCGGAGGAGAAGGAGGTGGTGGTGGTGTGCATGGATACTTTAATTTGGTACCTTAA 1524 0.4364 MSNITSCDSGSFSTDNTTRGDAVKQQPDILGQFHSSNSHSSSITNNSHGSNTNSQPPPPAKKKRSLPGNPDPSAEVIALSPNTLVATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNTEVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYKCDCGTIFSRRDSFITHRAFCDALSDENNKANNDGQLLPNIGSNLLQGQPIPNLIASSLPINTINRNNPQNIATSEFKHSDHKYPLSSLPSSLMPMPTKPPFNNNMPSGTTFTRSLSPNPSAPSLQLSSNSLNMLEENGFHLAAGFSPMSATSLLQKAAQMGATMGNNTASSGLAEKSFVMTSMTPQSLIGSVPSNGIMEQYIHNAHQQDIINSSHDQYSNFNVNGMVGMNGVDVFNAILDQSKALSKIIEQNNSRSSNDVLHGGCTMNGRPSSSINIGGTKGSSDQDVMTLDLLGIGGEGGGGGVHGYFNLVP* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3366 507 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 26 492 - -
Dod01g3366 507 Gene3D Classic Zinc Finger 145 224 - -
Dod01g3366 507 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Dod01g3366 507 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 26 492 - -
Dod01g3366 507 MobiDBLite consensus disorder prediction 1 59 - -
Dod01g3366 507 MobiDBLite consensus disorder prediction 1 75 - -
Dod01g3366 507 Pfam Zinc-finger double-stranded RNA-binding 90 112 IPR022755 -
Dod01g3366 507 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 112 IPR013087 -
Dod01g3366 507 SUPERFAMILY beta-beta-alpha zinc fingers 89 186 IPR036236 -
Dod01g3366 507 Gene3D Classic Zinc Finger 70 136 - -
Dod01g3366 507 SMART c2h2final6 166 186 IPR013087 -
Dod01g3366 507 SMART c2h2final6 131 161 IPR013087 -
Dod01g3366 507 SMART c2h2final6 90 112 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3366 Dod-Chr1 74918643 74923386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3366 35 226 IDZ Gene Family AT3G50700 77.604 4.68e-111 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod01g3366 zf-C2H2_jaz 7.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3366 - - gmx:100785295 601.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3366 01 74918643 74923386 Dod06g1768 06 24428350 24432426 PCT