Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3348 ATGAACCCTGAAGATGAAGCCGAAGAAGATGGCGCCAACATTGACCTTGACTCCCAAAGGAAAGTAAATTGTGTTGTGCTCAAGACATCTACTCGACAGACTATCTTTCTTGCTGTTGTTGGGTTTGCTGACACTGAGAAGTTAAAACCTGGTGATCTGGTTGGCGTCAACAAAGATAGTTACTTGATTCCCTGCCTTCTGAGTATGGTTCTCGAGTTAAGGCCATGGAAGTTGATGAAAAGCCAACAGAGGACTACAATGACATTGATCCAAGAATTAGTTGAAGCCATTGTTTTGCCAATGACCCACAAGGAGCGGTTCCAGAAATTAGGAGTTCATCCGCCAAAGGGAGTGCTCTTATACGGACCTCCAGGGACTGGGAAAACTTTAATGGCTCGAGCTTGTGCAGCACAAACAAATGCCACTTGCCTGAAGTTGGCAGGCCCACAGCTGGTCCAGAGTCGCTATCTCTTCAACCCATCTAAATTTTGGGAGTTGTATTCACATCTTTGTTCTGGATTTGGATTGGAAGAGTGA 537 0.4525 MNPEDEAEEDGANIDLDSQRKVNCVVLKTSTRQTIFLAVVGFADTEKLKPGDLVGVNKDSYLIPCLLSMVLELRPWKLMKSQQRTTMTLIQELVEAIVLPMTHKERFQKLGVHPPKGVLLYGPPGTGKTLMARACAAQTNATCLKLAGPQLVQSRYLFNPSKFWELYSHLCSGFGLEE* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3348 178 Pfam Proteasomal ATPase OB C-terminal domain 18 63 IPR032501 -
Dod01g3348 178 Gene3D - 15 70 IPR012340 -
Dod01g3348 178 PANTHER 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG A 1 153 - -
Dod01g3348 178 Pfam ATPase family associated with various cellular activities (AAA) 118 156 IPR003959 GO:0005524|GO:0016887
Dod01g3348 178 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 1 153 - -
Dod01g3348 178 CDD AAA 113 153 - -
Dod01g3348 178 Gene3D - 76 169 IPR027417 -
Dod01g3348 178 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 162 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3348 Dod-Chr1 74786102 74787202 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3348 110 157 Calmodulin-binding Proteins AT3G56690 47.917 1.10e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3348 K03065 - pvy:116108352 224.557