Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3345 ATGAGTAGCCGATCAAGTCGCACAATCTATGTTGGCAATCTTCCTGGTGATGTTCGTTTGAGAGAAGTGGAGGATCTTTTCTACAAGTATGGTCCTATAGTTGACGTTGATTTGAAGATTCCTCCAAGACCGCCTGGTTATGCTTTTGTGGAGTTTGAGGATGCTCAAGATGCTGAAGATGCAATTCGTTATCGAGATGGTTACAATTTCGATGGTGTTCGTTTACGAGTTGAACTTGCACATGGTGGACGGGGATATTCATCATCAGTAGATCGTTATTGTAGTTATACTGGTAGCGGTAGTAGCCGTGGAATTTCCAGGCGTTCTGACTATCGTGTTCTGGTCACTGGATTACCTCCTTCCGCTTCATGGCAAGACCTGAAAGATCATATGCGTAAAGCTGGTGATGTATGTTTCTCTCAAGTCTTCCGTGAACGCGGTGGCATGACTGGAATAGTTGATTATACAAATTATGATGATATGAAATATGCTATTAGGAAACTTGATGACTCAGAATTCCGAAATGCCTTTTCCCGAGCATACATACGGGTGAGAGAATATGATCAGCGAAGTTCTTCTAGAAGTCCCAGTAGTGATTCAAGAAGGAGCTATTCTAGAAGTCCTAGCCGCAGTCCGTATATATCTCGAATTAGGAGCCGCAGTCGAAGTCGTAGCTATAGTGGCAGGAGCAGGAGCTTGTCTCCCAGGGCGAAACACTCCCGGCAGCGGTCTGTTTCTCATTCAAGATCTTTGTCAAGATCCAGATCTCCATATTCATCTCCTCCACCTCGCAAGGGTCAGAGTCCTAGCCGAAGTCCAAGAAGCCTGTCACGATCTCGTTCGCCTTCAGTGAGATCTGAACGCAGCCGGTCTGTTAACTCCGGAGACCGCTATTGA 897 0.4582 MSSRSSRTIYVGNLPGDVRLREVEDLFYKYGPIVDVDLKIPPRPPGYAFVEFEDAQDAEDAIRYRDGYNFDGVRLRVELAHGGRGYSSSVDRYCSYTGSGSSRGISRRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYIRVREYDQRSSSRSPSSDSRRSYSRSPSRSPYISRIRSRSRSRSYSGRSRSLSPRAKHSRQRSVSHSRSLSRSRSPYSSPPPRKGQSPSRSPRSLSRSRSPSVRSERSRSVNSGDRY* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3345 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Dod01g3345 298 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 293 - -
Dod01g3345 298 MobiDBLite consensus disorder prediction 234 248 - -
Dod01g3345 298 CDD RRM1_SF2_plant_like 8 79 - -
Dod01g3345 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Dod01g3345 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 75 IPR000504 GO:0003723
Dod01g3345 298 MobiDBLite consensus disorder prediction 193 233 - -
Dod01g3345 298 MobiDBLite consensus disorder prediction 186 298 - -
Dod01g3345 298 SUPERFAMILY RNA-binding domain, RBD 5 177 IPR035979 GO:0003676
Dod01g3345 298 MobiDBLite consensus disorder prediction 281 298 - -
Dod01g3345 298 CDD RRM2_SF2_plant_like 111 186 - -
Dod01g3345 298 Gene3D - 1 110 IPR012677 -
Dod01g3345 298 Gene3D - 111 188 IPR012677 -
Dod01g3345 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Dod01g3345 298 PANTHER PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN 2 293 - -
Dod01g3345 298 SMART rrm1_1 112 181 IPR000504 GO:0003723
Dod01g3345 298 SMART rrm1_1 8 78 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3345 Dod-Chr1 74768298 74775696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3345 8 80 Eukaryotic Initiation Factors Gene Family AT3G11400 34.211 2.37e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3345 K12890 - gmx:100794282 375.17