Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3339 ATGCCATGGCAGGGACCAGAGGGTCGTCTTTCCGGAATGGACACTTGCTACTACGCTGAGCTCAATAACCGTGGCCCTGGTTCAGACAAGAGCAAGCGCGTGAAGTGGCAAGGAGTGAAGACCAACATCTCACCAGAAGGAGCAACAAACTTCTTGCCATCACGGTTCTTCAATGGAGATGACTGGATTACCGTTTCTAAGATTCCTTACAACCCTGGCTCCCCTAAGCATTAA 234 0.5043 MPWQGPEGRLSGMDTCYYAELNNRGPGSDKSKRVKWQGVKTNISPEGATNFLPSRFFNGDDWITVSKIPYNPGSPKH* 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3339 77 Pfam Pectinesterase 3 60 IPR000070 GO:0030599|GO:0042545
Dod01g3339 77 PANTHER PECTINESTERASE 1 75 - -
Dod01g3339 77 Gene3D - 1 74 IPR012334 -
Dod01g3339 77 PANTHER PECTINESTERASE 1 75 - -
Dod01g3339 77 SUPERFAMILY Pectin lyase-like 13 71 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3339 Dod-Chr1 74516036 74516269 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3339 2 73 Carbohydrate Esterase AT4G03930 41.667 6.96e-17 71.2