Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3338 ATGTCTGGGGGAGACTCAAAGAGGCGGAAGAGACTCGCCATCATTGGCGTCTCTACCTTCTTACTAGTGGCAATGGTGGCAGCCGTCACGGTTACCATATACATCAAGAACGGGAAAGACGAAGAGGCAAAAGACAACAACAATGCCAATGTGGCAACATCGATGAAAGCGGTGAAAACCCTTTGCGCCCCGACAGATTACAAGAAGGAATGTGAGGATACTTTGGTCGCCAATTCAGGAAACACCGCGGACCCAAGAGAACTCATCAAGGTGGCTTTCAACGCAACCATCAAGATGATCAGCAATGGTGTCCAGAAGACGCAGCTGTTGCAGGACATTGAGAAGGACCCAAGGTCCAAACAGGCACTCGACTCGTGCAAGCAACTCATGGACCTCTCCATTGGGGAGTTCACGAGGTCGCTTGATAAGCTCGGGAAATTCGATTTGAACAACATCAACAACATCCTCGCGAGCTTGAAGGTGTGGCTCAGCGGTGCCATCACGTACCAAGAGACATGCTTGGATGCGTTCGAGAACACCACCAGCAACGCCGGTCAGAGGATGAAGGAGTACTTGCAGACCTCGATGCACATGAGCAGCAACGGCCTCGCCATCATCAACGAGCTCGCCAAGAGCATCAGCGACATCAATCTTCGCAAAACCGATGGTCGTCGTTTGGTCCAGGATGCTGAGGATGTGCCTGTTCTTGGACATGGCGATGATGGTGAGCTTCCTGAGTGGATTGAGGACCGTATTGCTGCTCGTAGGCTCCTTAATGCTGGTGCTTCGAGGAAGATCAAGGCTAATCTGGTTGTTGCCAAGGACGGCACTGGGCAGTTCAAGACCATCACCGACGCACTGAAGAAGGTTCCCCGCAACAACCAGAAGCCGTTCATCATCTACATCAAGGAGGGCATCTACAAGGAGTACGTTGAAGTTCCCAGGGACTTGACACACGTCGTCTTCGTCGGTGATGGTGGCCACAAGACCCGCATCACTGGCAACAAGAACTTCATCGATGGGGTTAACACCTACAAGACCGCCACTGTTGGTACGTAA 1059 0.5203 MSGGDSKRRKRLAIIGVSTFLLVAMVAAVTVTIYIKNGKDEEAKDNNNANVATSMKAVKTLCAPTDYKKECEDTLVANSGNTADPRELIKVAFNATIKMISNGVQKTQLLQDIEKDPRSKQALDSCKQLMDLSIGEFTRSLDKLGKFDLNNINNILASLKVWLSGAITYQETCLDAFENTTSNAGQRMKEYLQTSMHMSSNGLAIINELAKSISDINLRKTDGRRLVQDAEDVPVLGHGDDGELPEWIEDRIAARRLLNAGASRKIKANLVVAKDGTGQFKTITDALKKVPRNNQKPFIIYIKEGIYKEYVEVPRDLTHVVFVGDGGHKTRITGNKNFIDGVNTYKTATVGT* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3338 352 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 211 IPR035513 -
Dod01g3338 352 SUPERFAMILY Pectin lyase-like 266 350 IPR011050 -
Dod01g3338 352 PANTHER PECTINESTERASE 12 350 - -
Dod01g3338 352 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 56 209 IPR035513 -
Dod01g3338 352 Gene3D - 263 352 IPR012334 -
Dod01g3338 352 SMART PMEI_2 53 205 IPR006501 GO:0004857
Dod01g3338 352 ProSitePatterns Pectinesterase signature 1. 294 313 IPR018040 -
Dod01g3338 352 TIGRFAM PME_inhib: pectinesterase inhibitor domain 53 209 IPR006501 GO:0004857
Dod01g3338 352 Pfam Plant invertase/pectin methylesterase inhibitor 57 205 IPR006501 GO:0004857
Dod01g3338 352 CDD PMEI-like_3 60 211 - -
Dod01g3338 352 Pfam Pectinesterase 269 351 IPR000070 GO:0030599|GO:0042545
Dod01g3338 352 PANTHER PECTINESTERASE 12 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3338 Dod-Chr1 74514277 74515335 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3338 5 351 Carbohydrate Esterase AT3G05610 43.966 3.25e-106 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3338 K01051 - gmx:100801686 445.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3338 01 74514277 74515335 Dod06g1952 06 29083213 29085901 ECH
Dod01g3338 01 74514277 74515335 Dod01g3338 01 74514277 74515335 ECH
Dod01g3338 01 74514277 74515335 Dod06g1797 06 24830027 24832909 PCT