Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3328 ATGGTAAGGGGAGGAAAGGTTAGTGGCAAACGCAATTTCAGGAAAAGGGCTAGGTCAAAGGAGGGCGGTTCCGATGAGTCTGATGAGGACTATGTGGTTTCGGATGAAGATAGATATGTGTCTGATTGTCCCGACGATTATAGCTCCTCTTTAGATGGATGTGCATCGGAGGAGAGTTTTGATGGTGATGGTTTTATAGAAGATGAGGAGGAGGAAGAGAAAATTCAACCTGTGAGGAAATTCAATAGATCTAAGGCCAAAAATGGTGTTTGTGGTTGGCGGAAAAATGCAAGTAAAACCTCACGAAAGAGGGGGAGGATTACAAATGTAGAACAAGAAGAACAAGAGCGAGATGCTGAGGGGGAGGAGGATGAGGATGAGGACAAGGACAAAGACAAGGATGAGGACTTCAATTATGATGATAATGATGATGATGATGAGGAATTTACACCAGAGGAAGAAGATTACTCAGATGACGAAGAAGACTTTGATTATGATGATGATGATGATGATGATGATGATGATGAGGAATTTACACCAAAGGAAGAAGATTGCACAGATGATGAAGAAGGAACAAGGGTTAGAAAGAAGAAAAAGAATGGTATGAAAATGGGAAAGAAGGTTTTGAAGAGAAGGGTTTCTGGGACTTCTACCCGACGCAGAAAGAGGAGGAGTTCTAGAGCTTCAAAGAAGCCCTTGAGAAAGAAAAGAAGAAAGAATGGAGGGTTAAAGAGGAAAGTAAGATCTAAAGACGCGGATGATTTTATAGATAATTGCCCAGCCATTAGGAAAAAGAGGACGAAAAAACTTGGCCAGGAAAACAGTAGGCTTCTCATTAAAGAATCCAATTCCGATTGTGTTTCATCTGATTATGAGTTTACTATCTCTGAAGAAGAGAGAGAGCAGGTGAGAGAAGCCAAAGAATTGTGTCCAAGTTTGAGAAGGAATTTGAGGAGTTCTTCCCTTGTAGTGAAAGATGTAGAGTCTGGAGTACATGAAGATCTGCATTGGCAACGAAGGCCGCCTGGCCGGAAGGGTAAGGAAAAGATAGAGGAACCCCAAGGGAAAAAGGGGAAGGAAAAGGTAGAGGAGTTAAAAAGTGAGGTGGGAAAGCAATTGTGTGGAATTTGTCTATCCGAGGAAACTAAAAGAAGAGTAAGAGGAGTACTAGATTGTTGCACTCACTACTTTTGCTTTTCTTGCATTATGGAGTGGGCAAAAGTGGAATCTCGCTGTCCTTTGTGTAAGCAGAGATTCAAATCAATCAGTAAGCCTGCTCGATCATCAGCAGGGATTGATTTGAGAGAAGTGGTGGTACAAGTCCCCGAGCGTGATCAGGTTTATCAGCCCTCTGAAGAAGAGCTCAGGAGCTACATTGATCCATATGAGTCTGTTATATGTTCAGAGTGCCATCAAGGTGGAGATGATGCACTCATGTTACTCTGTGATATCTGTGATTCCCCTGCACACACGTACTGTGTTGGTCTGGGCTGGGAAGTACCTGAAGGTAATTGGTATTGTGATGGTTGTAGACCAGTTGCTTTGGGATCTTCAAGTTCTCAAGTTCAGGAACGTGTGGGTGATCCAAGGGCCACAACTCAAAGCCTGCCTGTTAGACCATTACCTGTTCTTAATGTACCAGAAAGTATAGACCTCAACTTGATGTCTTCACCTCGTACATCTTTTAGTCAAGGATATGGGCATATTTCATCTTCTAGATTTTCTGGTAGAAGTGTTGAAGCAGCTTCTCCAGTATCTGGAGGAGGGGCACCCACTTTATCAGAAAGACGCTGGATCCACCGACAAATTCAGCAGATACTTTCAATGGATAGAATGACTTCTACTCCTAGCAGAACTAATGGTATTTCAGCTACCAATTCAACAAGTAACTTGCATATTTCGCAAATTGATCAAAACAGGGAAACAAATGCCACTTTACATGCAAGGACACAGGATGTGGGGACATCATATTACCCATTCCTCGAGGAGAGATTATGCAACAATAATTCTCTGTCAATACAGACTGGAGATCCCTCCTCCATGAGAACAAGCAATGCAAGAAGACCAGTGGTTCAGGATTCAATTATGGTTTCCAGCAGTCCCATGAATGGGGTGCTGTGGCCTGGACTTGTGGGGACACCCTCCGTACCAGATAATTTACCAGCCCATCAGTTCAGCACTAGATCAAACATTGTAACTGATGTTAGCTTGCCCCCCGCTATCAGAGAACAGAGTAACTTCCAAATTGTAAAGGAGCAGTTGCAGTCAATGGTTAAAAGCCACCTAAAGAGCTTGTCTCGGGATATTGATTTAGGGCATAGTACTTTCAAGGAAATTGCAAGGAGTTCTACTCACACCATACTAGCAGCCTGTGGTCTTGAGCACAATATGAGTGAGGTTTGCACTGTGATCCCATCACCTGTCTGCCCCCACATTGAACTAATGGCGGGTGGACAAACCAGTCCGATCAAAGGTTGCTGCTCATATTGCTTTGATTCTTTTGTAAGAGATGTGGTGAAAGGGATTTTCGACACTAAAATGTCGTCACAGTGGTTACGATTAGGACTTTAG 2571 0.4313 MVRGGKVSGKRNFRKRARSKEGGSDESDEDYVVSDEDRYVSDCPDDYSSSLDGCASEESFDGDGFIEDEEEEEKIQPVRKFNRSKAKNGVCGWRKNASKTSRKRGRITNVEQEEQERDAEGEEDEDEDKDKDKDEDFNYDDNDDDDEEFTPEEEDYSDDEEDFDYDDDDDDDDDDEEFTPKEEDCTDDEEGTRVRKKKKNGMKMGKKVLKRRVSGTSTRRRKRRSSRASKKPLRKKRRKNGGLKRKVRSKDADDFIDNCPAIRKKRTKKLGQENSRLLIKESNSDCVSSDYEFTISEEEREQVREAKELCPSLRRNLRSSSLVVKDVESGVHEDLHWQRRPPGRKGKEKIEEPQGKKGKEKVEELKSEVGKQLCGICLSEETKRRVRGVLDCCTHYFCFSCIMEWAKVESRCPLCKQRFKSISKPARSSAGIDLREVVVQVPERDQVYQPSEEELRSYIDPYESVICSECHQGGDDALMLLCDICDSPAHTYCVGLGWEVPEGNWYCDGCRPVALGSSSSQVQERVGDPRATTQSLPVRPLPVLNVPESIDLNLMSSPRTSFSQGYGHISSSRFSGRSVEAASPVSGGGAPTLSERRWIHRQIQQILSMDRMTSTPSRTNGISATNSTSNLHISQIDQNRETNATLHARTQDVGTSYYPFLEERLCNNNSLSIQTGDPSSMRTSNARRPVVQDSIMVSSSPMNGVLWPGLVGTPSVPDNLPAHQFSTRSNIVTDVSLPPAIREQSNFQIVKEQLQSMVKSHLKSLSRDIDLGHSTFKEIARSSTHTILAACGLEHNMSEVCTVIPSPVCPHIELMAGGQTSPIKGCCSYCFDSFVRDVVKGIFDTKMSSQWLRLGL* 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3328 856 ProSitePatterns Zinc finger RING-type signature. 393 402 IPR017907 -
Dod01g3328 856 CDD RING-HC_Topors 374 416 - -
Dod01g3328 856 Pfam Ring finger domain 374 416 IPR001841 -
Dod01g3328 856 MobiDBLite consensus disorder prediction 197 245 - -
Dod01g3328 856 PANTHER F18C1.6 PROTEIN 1 157 - -
Dod01g3328 856 MobiDBLite consensus disorder prediction 115 185 - -
Dod01g3328 856 ProSiteProfiles Zinc finger PHD-type profile. 464 513 IPR019787 -
Dod01g3328 856 SUPERFAMILY FYVE/PHD zinc finger 438 512 IPR011011 -
Dod01g3328 856 SMART ring_2 374 415 IPR001841 -
Dod01g3328 856 PANTHER F18C1.6 PROTEIN 168 844 - -
Dod01g3328 856 ProSiteProfiles Zinc finger RING-type profile. 374 416 IPR001841 -
Dod01g3328 856 Pfam PHD-finger 466 512 IPR019787 -
Dod01g3328 856 MobiDBLite consensus disorder prediction 1 251 - -
Dod01g3328 856 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 438 514 IPR013083 -
Dod01g3328 856 PANTHER F18C1.6 PROTEIN 1 157 - -
Dod01g3328 856 PANTHER F18C1.6 PROTEIN 168 844 - -
Dod01g3328 856 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 350 437 IPR013083 -
Dod01g3328 856 MobiDBLite consensus disorder prediction 333 362 - -
Dod01g3328 856 SMART PHD_3 466 511 IPR001965 -
Dod01g3328 856 Coils Coil 296 316 - -
Dod01g3328 856 SUPERFAMILY RING/U-box 373 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3328 Dod-Chr1 74351383 74354626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3328 374 421 C3H Transcription Factor Family AT2G39100 43.750 1.67e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dod01g3328 PHD 6.7e-08 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3328 01 74351383 74354626 Dod01g3328 01 74351383 74354626 ECH