Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3325 ATGGTAAACATGGATATCAAGAAGGAGTGGTCATCTGGGGATTTGAGTGAGAGCAAGAAGTGTTGCACTGATTGCAAAACCACCAAGACTCCATTATGGAGGGGAGGACCAGCTGGGCCCAAGACTCTCTGCAACGCTTGCGGAATAAGATACAGGAAGAGAAGGGCTTCTACGGTGGGAATGAACAAAGGACAAGAGAGGAAGAGAGAGAGAGCACAAAGTGGCACTAGCGGTGAAGTTGATGTTTGTGGTAGCGATTTGAATGAGTCTTTGAAGGTGAATTTGATGGCATTGAGTGATGAGTTTTGGTTGCAGCGTTCATCCTCGGTTGTGAAGAAGAAACAAAGGAGTAAGTTAGGGGAGGAGGAACAAGCAGCTTTCTGTTTGATGGCACTGTCCTGCGGCTTTGTTTTCGCTTAA 420 0.4667 MVNMDIKKEWSSGDLSESKKCCTDCKTTKTPLWRGGPAGPKTLCNACGIRYRKRRASTVGMNKGQERKRERAQSGTSGEVDVCGSDLNESLKVNLMALSDEFWLQRSSSVVKKKQRSKLGEEEQAAFCLMALSCGFVFA* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3325 139 ProSitePatterns GATA-type zinc finger domain. 22 47 IPR000679 GO:0006355|GO:0043565
Dod01g3325 139 Gene3D - 17 78 IPR013088 GO:0006355|GO:0008270
Dod01g3325 139 Pfam GATA zinc finger 22 55 IPR000679 GO:0006355|GO:0043565
Dod01g3325 139 MobiDBLite consensus disorder prediction 58 80 - -
Dod01g3325 139 CDD ZnF_GATA 22 55 IPR000679 GO:0006355|GO:0043565
Dod01g3325 139 MobiDBLite consensus disorder prediction 59 75 - -
Dod01g3325 139 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 19 55 - -
Dod01g3325 139 ProSiteProfiles GATA-type zinc finger domain profile. 16 52 IPR000679 GO:0006355|GO:0043565
Dod01g3325 139 SMART GATA_3 16 74 IPR000679 GO:0006355|GO:0043565
Dod01g3325 139 PANTHER OS01G0976800 PROTEIN 11 139 - -
Dod01g3325 139 PANTHER GATA TRANSCRIPTION FACTOR 16 11 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3325 Dod-Chr1 74335425 74336574 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3325 9 139 C2C2-Gata Transcription Factor Family AT5G49300 48.855 6.60e-31 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dod01g3325 GATA 3.4e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3325 - - lang:109330084 170.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2629 05 52523884 52529109 Dod01g3325 01 74335425 74336574 ECH
Dod01g3325 01 74335425 74336574 Dod01g3325 01 74335425 74336574 ECH