Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3297 ATGTCGTCTTCGCAACCAAACGTCGATCCCAGTAATTCAGAAACGCTGCAAGGTTCCAATCCCAAGAAGAGAAGGATAATCGGCGTCAGCAACAATTCCCTCAGCCTCATTCCATGGAGATCCGAGACGGAGCAGCGGATCTACTCCTCCAAGCTCGCCAACGCTCTCCACCGCGTCCTCCGCCGTGATCCGCCGCCGACGCCGGCCAAGCCTAATACCGGCCGCGAGGTCCGCGAGACCGCCGACCGAGTCCTCGCCGCCACGGCCAGGGGCCGGACTCGGTGGAGCCGCGCGATTCTGGCGAGTCCTCTCAGCCGGTGGAAGCTCCGGAGGCTGCACAAGAAGGTTCGCAAGGCCGCCGCCGGAGGATTGGCGAAGAGGCTGCCGGTGATTCGCCGGAGGTTACCGGCGGTACAGAAGAAAGCACGCGTTCTTGGCCGGTTGGTTCCCGGTTGCCGGAAGCTCTCGTTCCCGAATCTTCTAGAAGAAGCCACCGACTACATCTCGGCGCTGGAGATGCAGGTGCGAGCCATGACTGCACTCGCCGAGCTACTCACCGGCGGCGGCGCTCCGCGGATAACTCCGCCGTGA 591 0.6328 MSSSQPNVDPSNSETLQGSNPKKRRIIGVSNNSLSLIPWRSETEQRIYSSKLANALHRVLRRDPPPTPAKPNTGREVRETADRVLAATARGRTRWSRAILASPLSRWKLRRLHKKVRKAAAGGLAKRLPVIRRRLPAVQKKARVLGRLVPGCRKLSFPNLLEEATDYISALEMQVRAMTALAELLTGGGAPRITPP* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3297 196 MobiDBLite consensus disorder prediction 1 27 - -
Dod01g3297 196 PANTHER TRANSCRIPTION FACTOR BHLH150 17 190 - -
Dod01g3297 196 CDD bHLH_AtIBH1_like 132 182 IPR044549 GO:0006355
Dod01g3297 196 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 122 171 IPR011598 GO:0046983
Dod01g3297 196 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 17 190 IPR044660 GO:0006355
Dod01g3297 196 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 132 187 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3297 Dod-Chr1 74003016 74005396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3297 32 178 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09250 50.323 6.26e-40 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3297 - - aprc:113873135 215.312
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3297 01 74003016 74005396 Dod01g3297 01 74003016 74005396 ECH
Dod01g3297 01 74003016 74005396 Dod06g1855 06 26684342 26685271 PCT