LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod01g3276	ATGGGTGGCAATCTTAATGCTGAATTATCCAAGGAAACTCCCATTTTTGGCCTTAAGGTTTGGGAAATAGTGGGAATTGCCGTTGGATTGTCTATTATTATCATCCTCTCTTTGCTCTCACTTTGCCTTACCTCGAGGAAGAAATCTAGAAAAGCTAAGGATAAGATTCCTATTAGTCAGATACCGACAATCTCAAAGGAAATCAAGGAAGTGAGGGTTGAGCAAGTATCAACAAATGGATTTGCTCCCCGTGAGGGGATACTTCTTACAATTCATGACAAATCCAGTGACAAAGATTCAGACAAAGTCATGGTTCATTTAGGTGTGGGGACGATGAGGAATGGGGATAACAGCAGTCAATCAGGGTCATTTCATCACATCGAGAAAGATGGAGGAGGGTCATACTCAGGAGAAGATGGTAGCTCTGGAACTGTTACAGTGCACAAGCACTCTTCTCACCCTATAACAGCTCCTTCACCACTGACTGGCCTTCCGGAGTTCTCTCACTTGGGCTGGGGTCACTGGTTTACCTTGAGGGATCTTGAACTTGCTACAAACCGTTTTTCCAAAGACAATGTCATTGGTGAAGGTGGTTATGGAGTTGTTTATCGAGGACAGTTGATCAATGGGACTCCAGTGGCGGTTAAAAAGATACTCAACAACATTGGTCAGGCTGAGAAAGAATTTAGAGTGGAGGTTGAAGCCATTGGCCATGTGCGCCACAAAAATTTGGTTCGCCTTTTGGGGTACTGCATTGAGGGGACTCACAGGATGTTAGTCTATGAGTATGTAAATAATGGAAATTTGGAGCAATGGCTTCATGGAGCTATGCGTCACCATGGATATCTTACATGGGAAGCACGTATCAAGATTCTCCTTGGCACGGCCAAAGCGCTTGCATATTTGCATGAAGCAATTGAGCCGAAGGTGGTACACCGAGATATCAAGTCAAGCAACATATTAATTGATGACGATTTCAATGCCAAGGTTTCTGATTTTGGCCTGGCTAAGTTATTGGGTGCTGGAAAAAGTCATGTCACCACACGAGTTATGGGGACCTTTGGATATGTGGCTCCTGAATATGCAAATACTGGCCTTCTAAATGAAAAGAGTGATGTGTACAGCTTTGGTGTTTTGCTACTAGAAGGAATTACTGGAAGAGATCCAGTAGACTATGGTCGTCCAACACAAGAAGTGAATCTTGTTGATTGGCTGAAGATGATGGTTGGAAACAGGCGATCAGAAGAAGTGGTGGATCCAAACATTGAGGTGAAGCCATCAACCAGAGCTTTAAAACGTGCTCTCTTAACTGCTCTAAGATGCGTAGATCCAGATTCTGAGAAAAGGCCAAGGATGAGCCAAGTTGTACGTATGCTGGAGTCAGAGGAATATCCTTTGGCAAGAGAGGACCGTAGGCACCGAAGAAACCGAGGTGGAAGTGGAGAAATTGAATCCCAGAAGGAATATTCTGACACTGACAAGAGTGAGATTCAAGGTTCCAGTTAA	1506	0.4396	MGGNLNAELSKETPIFGLKVWEIVGIAVGLSIIIILSLLSLCLTSRKKSRKAKDKIPISQIPTISKEIKEVRVEQVSTNGFAPREGILLTIHDKSSDKDSDKVMVHLGVGTMRNGDNSSQSGSFHHIEKDGGGSYSGEDGSSGTVTVHKHSSHPITAPSPLTGLPEFSHLGWGHWFTLRDLELATNRFSKDNVIGEGGYGVVYRGQLINGTPVAVKKILNNIGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRMLVYEYVNNGNLEQWLHGAMRHHGYLTWEARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKVSDFGLAKLLGAGKSHVTTRVMGTFGYVAPEYANTGLLNEKSDVYSFGVLLLEGITGRDPVDYGRPTQEVNLVDWLKMMVGNRRSEEVVDPNIEVKPSTRALKRALLTALRCVDPDSEKRPRMSQVVRMLESEEYPLAREDRRHRRNRGGSGEIESQKEYSDTDKSEIQGSS*	502

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Dod01g3276	501	ProSitePatterns	Protein kinases ATP-binding region signature.	194	217	IPR017441	GO:0005524
Dod01g3276	501	Gene3D	Transferase(Phosphotransferase) domain 1	264	475	-	-
Dod01g3276	501	Gene3D	Phosphorylase Kinase; domain 1	169	263	-	-
Dod01g3276	501	MobiDBLite	consensus disorder prediction	461	501	-	-
Dod01g3276	501	PANTHER	RECEPTOR-LIKE PROTEIN KINASE-RELATED	3	498	-	-
Dod01g3276	501	MobiDBLite	consensus disorder prediction	112	160	-	-
Dod01g3276	501	ProSiteProfiles	Protein kinase domain profile.	188	467	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Dod01g3276	501	MobiDBLite	consensus disorder prediction	461	494	-	-
Dod01g3276	501	SUPERFAMILY	Protein kinase-like (PK-like)	172	464	IPR011009	-
Dod01g3276	501	MobiDBLite	consensus disorder prediction	137	158	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod01g3276	Dod-Chr1	73794820	73800045	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod01g3276	165	462	Trihelix Transcription Factor Family	AT1G70460	50.495	2.43e-92	294

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-V	Dod01g3276		Pkinase	1.5e-47	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod01g3276	-		-	gmx:100787014	856.284

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod01g3276	01	73794820	73800045	Dod01g3276	01	73794820	73800045	ECH
	Dod01g3276	01	73794820	73800045	Dod08g0871	08	10585042	10592009	PCT

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