Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3264 ATGTCACTCCCATTAGCAAGACAGATCTCCCGAATCTCGGAGCCATGGCTGGATGTGTCCTATGAAGTTCCATTGACTTTTACAAAACGACAAAAGGGCAGGAGAGTTAAACTCGAGCATTATGCAAGTGTGAAACCATCAAATTTATCAATGCTAGTGGTAATAAGACCGTCCATCCACATGCACGTTTTTGCATATTCAACCCCACATATTAGTGCATATCCTTGTTTTTGGTCGACTAGACCCCTATACCGTGTCTTCAGATGGGCTCCAAGTCCATGGGAGCCTGAGTCCAAGCTGGTCCGCATTCCGCAAGCGAATTTTCTCCATTTGTCCTCAAAAGAAAAAAGAATACGATCGGTGACCATGACTAGGCAGAAGGTAAAACTAGAGTACATATCCAATGGTTCTGCAAGAAAAGCAACATTCAGGAAAAGGAAGAGGGGTATCATGAAGAAGGTGAATGAACTAGCCATCCTTTGTGGGATTGAGACATGTGCTATTATTTTCAGTCCCTTTGACTCTCAGCCAGAGGTTTGGCCAAACCCACAGGGAGCACAACAGGTGATTGAGAGGTATCAGAATCAGAATGCAACAGTGGCTGATGAGAGCAGGAGTGTTAACCAACACAGTTTCATGATGCAGAGGATTGCTAGAGCCAATGAACAGTTGCAAAAGCTGCGGAAGGAGAACCATGACAAGGAGATGAACCTTGCTATGCTCCAAGCTATGGAAGGAAAAAGCCTGCCAGAAAACCTGACAATTGAAGACCTGAATGATATCAAATCTATGATCGAGCTCAATATGGCGGAAATTGAAAGCAAGATCAATGCACTTCTTGACTGA 846 0.4409 MSLPLARQISRISEPWLDVSYEVPLTFTKRQKGRRVKLEHYASVKPSNLSMLVVIRPSIHMHVFAYSTPHISAYPCFWSTRPLYRVFRWAPSPWEPESKLVRIPQANFLHLSSKEKRIRSVTMTRQKVKLEYISNGSARKATFRKRKRGIMKKVNELAILCGIETCAIIFSPFDSQPEVWPNPQGAQQVIERYQNQNATVADESRSVNQHSFMMQRIARANEQLQKLRKENHDKEMNLAMLQAMEGKSLPENLTIEDLNDIKSMIELNMAEIESKINALLD* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3264 281 SUPERFAMILY SRF-like 123 197 IPR036879 GO:0003677|GO:0046983
Dod01g3264 281 Coils Coil 210 244 - -
Dod01g3264 281 CDD MADS_SRF_like 124 202 IPR033897 GO:0000981|GO:0000987|GO:0045944
Dod01g3264 281 PRINTS MADS domain signature 145 160 IPR002100 GO:0003677|GO:0046983
Dod01g3264 281 PRINTS MADS domain signature 125 145 IPR002100 GO:0003677|GO:0046983
Dod01g3264 281 PRINTS MADS domain signature 160 181 IPR002100 GO:0003677|GO:0046983
Dod01g3264 281 Gene3D - 136 219 IPR036879 GO:0003677|GO:0046983
Dod01g3264 281 Coils Coil 255 275 - -
Dod01g3264 281 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 132 172 IPR002100 GO:0003677|GO:0046983
Dod01g3264 281 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 124 278 - -
Dod01g3264 281 SMART madsneu2 123 182 IPR002100 GO:0003677|GO:0046983
Dod01g3264 281 ProSiteProfiles MADS-box domain profile. 123 171 IPR002100 GO:0003677|GO:0046983
Dod01g3264 281 PANTHER MADS BOX PROTEIN 124 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3264 Dod-Chr1 73690427 73693831 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3264 123 279 Type I MADS-box Gene Family AT5G48670 47.134 2.29e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dod01g3264 SRF-TF 6.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3264 - - gmx:100792290 187.963