Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3260 ATGCCTCTGCGTGAGTTGTACCGCATGGCTAAAGGGAAGCTTGATTCTAGAGAGATGATGAACACCACATGTGCACCTGCTCAATCAACAGCACCCGAGAATGATTTCATAGAGCTGGTTTGGGAAAATGGGCAGATTTCAGTGCAGGGTCAGTCCAGTAGAGGTAAAAAGAGCCCAACAACTTGTAAGAGTTTGCCCTCTCATTGCTTACCATCTCACTGTTCCAGGGGTCAGGATAATAAGGATGTAGGATATGCTAGTGCTACCAATAATAATGATATGATAAGGATGGGGAAGTTTGGGGATTTAGATAGTGGATTCAATGAACTTAGAATGCCGGTCCCATCAGGGGAAGTGGGTCTAACTCAAGATGAAGACGTGGTGATGCCTTGGTTGAATTATGGAATGGATGAGTCTTTGCAACATGAATATGGTTCTGATTTCTTGCATGAACTATCTGGGGTCACCATGAATGACCTCCCTCCCTCATATAATTTCTCTTTACTGGATAAAAGGAGTAATTGTCATCAGATATTTAGGGACTCTAACAAAAACTATTCACTTTCCAAGGGCTCTTCTGCTGCACCTAGAGAAGTTGAGAACTCTGGACCTAAAGCTGGCACAAGTCAGTTTTACCGTCCGTCATCCCATCAATATCAACCATCGTTTGCACCTGTTAGATCCAGGGTGTTAGATATTACTGAGAATAATGCTAGTAATGCTACTCAGCATGCACCTTGTGGGGAAATCACTCAGATTTTCCCATCTGCCTCAAGTGGTTTTTCTAGCTTAAAGATGAGGGATAAGCAAGATCCAATTATGTCCAGCAGTAGTTCCACCATAATGAACTTCTCTCATTTTGCAAGGCCTGCCGCTATTGTGAAAGCTAATCTTCAGAACATTGGCTTGTCTTCATCAAAATCAGAAAATATTGGAAATAAGAATAAAGGTGCTGCTGCAACTGCAATCAATCCTCCTGAATCAACAAACGTTGGTTTAAGTAGTGATTGTCCTAAGGAATCAGCAATGCACAAGCAGCAGGTTGTGGAGCCATCTAAGGCTGATTTGAAGCAATTGGAGCTAAAATCTCATGAAGGGAATGCTACTGTTTCCAAGCAGTCTGACCCTGCCCGCAAAGAAGATGTGTCCAAGATTGATCAAAATTCCAATCTACTTCATTGTGAAGGTAGCAACAAAGGACAGGAACCTGTTGAGAAAATTGTGGAACCAGCAGTAGCCTCTTCATCTGTTTGCTCTGGCAATGGTGCAGAGAGAGGCTCAGACGACCCAAATCAAAATTTGAAGCGAAAAAGGCGAGACATTGAGGACTCTGAGTGCCACAGTGAAGATGTTGAGGAAGTATCAGCGGGCATTAAAAAGGCTGCTTCAGCACGAGGGCGGATGCGTACCAAGAGAAGCCGTTCAGCTGAAGTGCATAATCTATCTGAAAGGAGGCGAAGAGACAGGATCAATGAGAAGATGCGTGCATTACAAGAACTCATACCAAATTGTAATAAGGTGGACAAAGCTTCAATGCTGGACGAGGCAATTGAGTACCTCAAAACACTTCAACTCCAAGTTCAAATTATGTCAATGGGAGCTGGTTATTATATGCCTCCAATGATGTTACCTGCGGGAATGCAGCACATGCATCCACCACACATGGCTTCTTTTTCCCCCATGGGTGTTGGCTTGCAAATGGGGTTCGGAATGGGTTATGGAATGGGTATGCATGACAACAATGGTGGATCTTCTAGATTCCCAATGATGCAGGTGCCCCAAATGCAAGGAACTCATCTTCCAGTTGCACCTATGTCTGGACCGTCTGCTTTTCTTGGAATGGGAAGATCAAATCCTCAAGTGTTTAACCTCCCTGGTCAGAGGCTAACAGTGCCAATGCCACGGGCTCCAATATTTTCTATCCCAGGAGAGCCTGTCGTAAACTCATCAGGCATTGGACTAAATGCCTGTGGAAAAGCAGGAGTTATGGAAAATGTGAATTCGGCTTCAGTCTTTAGCTTAAAGGATCCAATGCCAAATGCAAACTCACAAGTTATGCAGAACACCAATGGCTGTAACTCAACAAGTCAGATGACTACACAGTGTGAAGCAACAGCTGGCAGATTTGAACATTCAGCTTTGGTACGTAACACTGGTCCTCATGCCTGCGAGGCCAAAGACGGTGGAACTGTTAATGCCGTCAAAGAGGATAATAACCTTGTGATTGATAAATCTTGTGGGTTAGTATATGCAGGCACAAATACGACTTCATTTTGTCTTTTAACATGTTTCATATTGGAACAACTCATAGTTGTACTTGCAGGTTATGATTGA 2334 0.4357 MPLRELYRMAKGKLDSREMMNTTCAPAQSTAPENDFIELVWENGQISVQGQSSRGKKSPTTCKSLPSHCLPSHCSRGQDNKDVGYASATNNNDMIRMGKFGDLDSGFNELRMPVPSGEVGLTQDEDVVMPWLNYGMDESLQHEYGSDFLHELSGVTMNDLPPSYNFSLLDKRSNCHQIFRDSNKNYSLSKGSSAAPREVENSGPKAGTSQFYRPSSHQYQPSFAPVRSRVLDITENNASNATQHAPCGEITQIFPSASSGFSSLKMRDKQDPIMSSSSSTIMNFSHFARPAAIVKANLQNIGLSSSKSENIGNKNKGAAATAINPPESTNVGLSSDCPKESAMHKQQVVEPSKADLKQLELKSHEGNATVSKQSDPARKEDVSKIDQNSNLLHCEGSNKGQEPVEKIVEPAVASSSVCSGNGAERGSDDPNQNLKRKRRDIEDSECHSEDVEEVSAGIKKAASARGRMRTKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGYYMPPMMLPAGMQHMHPPHMASFSPMGVGLQMGFGMGYGMGMHDNNGGSSRFPMMQVPQMQGTHLPVAPMSGPSAFLGMGRSNPQVFNLPGQRLTVPMPRAPIFSIPGEPVVNSSGIGLNACGKAGVMENVNSASVFSLKDPMPNANSQVMQNTNGCNSTSQMTTQCEATAGRFEHSALVRNTGPHACEAKDGGTVNAVKEDNNLVIDKSCGLVYAGTNTTSFCLLTCFILEQLIVVLAGYD* 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3260 777 MobiDBLite consensus disorder prediction 186 220 - -
Dod01g3260 777 MobiDBLite consensus disorder prediction 203 220 - -
Dod01g3260 777 Pfam Helix-loop-helix DNA-binding domain 478 524 IPR011598 GO:0046983
Dod01g3260 777 PANTHER TRANSCRIPTION FACTOR PIF3 1 699 IPR044273 GO:0003700|GO:0006355
Dod01g3260 777 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 472 536 IPR036638 GO:0046983
Dod01g3260 777 MobiDBLite consensus disorder prediction 304 336 - -
Dod01g3260 777 CDD bHLH_AtPIF_like 474 536 - -
Dod01g3260 777 MobiDBLite consensus disorder prediction 414 428 - -
Dod01g3260 777 Gene3D - 469 532 IPR036638 GO:0046983
Dod01g3260 777 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 474 523 IPR011598 GO:0046983
Dod01g3260 777 MobiDBLite consensus disorder prediction 304 483 - -
Dod01g3260 777 SMART finulus 480 529 IPR011598 GO:0046983
Dod01g3260 777 MobiDBLite consensus disorder prediction 429 456 - -
Dod01g3260 777 PANTHER TRANSCRIPTION FACTOR PIF3 1 699 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3260 Dod-Chr1 73659308 73664162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3260 1 603 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 36.705 1.47e-74 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod01g3260 HLH 6.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3260 K12126 - gmx:100794974 828.935