Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3258 ATGGGAAGACACTCTTGTTGCTACAAGCAGAAGCTTCGTAAAGGCCTCTGGTCTCCGGAGGAAGACGAGAAGCTTTTGAATTACATAACTGAGCATGGCCATGGATGTTGGAGTTCAGTTCCCAAACTAGCAGGTCTGCAAAGGTGTGGGAAGAGCTGCAGATTGAGGTGGATAAATTACCTGAGGCCTGATTTGAAGAGAGGAGCCTTCTCACAGCAGGAAGAGAATTTGATTATTGAACTCCATGCAGTCCTTGGCAACAGGTGGTCTCAAATTGCAGCTCAGTTACCTGGAAGAACAGACAATGAGATAAAGAATCTATGGAATTCCTGCCTCAAGAAGAAGCTTAGGCAAAGAGGCATTGACCCAAGCACCCACCAACCGCTCTCTGAGATTGAGAACGACAAAGACAAGCCACCCACAGCAGACAAAACCAATCGGAAAGCCTCCAATGAGGTAAGCTTGGTTGAGCCAGCTGCTGCGCATGCTAAACCAAAGGCAATAACTTCAATGCCTACGGAGCGGTACCCCCTTGAAGTTTCTTCTTCTTCAGCTGCCCCCAAGATCAACACCACCAGCAGCAGCAATTTGACCATCAGTACCCCACCCACACAGGGACTATTCCTAGATAATAATAGGTTTGTCACCTCCATGAGTAGTTGCAGATCACCTTCTGATATGATGATAAGTTATCTATCTTTCAATAATCAGTTGAACTATGGACCAAACATGGGTCTCACTGCAAACCCCAACACCTCTTTTTGCTTCACACCAACTTCCACTTCTTCCCAAATCATGTCAGATCAGCTCAATTCTAGCATAGCCATGCTCCATAACTCTGTGTCATCAAGTTCAGTTGTTTTCCCAACAACACCAACACATGTGAAGCCCACTATTAGCCTCCAGGCTAATAATAACCCTTCCAATTCCATATCCAATGGTGACATTGATGGGGTTCAGAACTGGGAAGCCGCCAGTACCTTCAGCAGCAACAGCAACGGAAGCAAAAGTAATGGGAACAGCAGCAGCAGCACAAACTTCATTGATAGCAGCACTCTAAGTTGGGGGCTTGCAGAGTCAGCAAAGGCTGATGATAAAGATGCTCGTCTTCATGTTCATGTACCCTTACAAGCAGAACAAGAAGACATTAAATGGTCCGAATATCTCAACAGTACCCCATTTTTTCTGGGAAACAACACAGTGCAGCTGCAGCAGCATCAACCTTCTCACTCTTTCTACAGCAGTGATGAGGTGAAACCAGAAACAGGCTTCATAACAGACGAAAATAGTGCTACCTGGCACCATAGCCACCACCCACCAGCTTTTCATCAGCCCACAGATATATATGCCAAAGATCTGCAGAGGTTTTCAGTGGCTTTTGGACAAACCCTGTAG 1395 0.4602 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITEHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPSTHQPLSEIENDKDKPPTADKTNRKASNEVSLVEPAAAHAKPKAITSMPTERYPLEVSSSSAAPKINTTSSSNLTISTPPTQGLFLDNNRFVTSMSSCRSPSDMMISYLSFNNQLNYGPNMGLTANPNTSFCFTPTSTSSQIMSDQLNSSIAMLHNSVSSSSVVFPTTPTHVKPTISLQANNNPSNSISNGDIDGVQNWEAASTFSSNSNGSKSNGNSSSSTNFIDSSTLSWGLAESAKADDKDARLHVHVPLQAEQEDIKWSEYLNSTPFFLGNNTVQLQQHQPSHSFYSSDEVKPETGFITDENSATWHHSHHPPAFHQPTDIYAKDLQRFSVAFGQTL* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3258 464 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dod01g3258 464 SMART sant 66 114 IPR001005 -
Dod01g3258 464 SMART sant 13 63 IPR001005 -
Dod01g3258 464 MobiDBLite consensus disorder prediction 175 198 - -
Dod01g3258 464 Gene3D - 68 148 - -
Dod01g3258 464 CDD SANT 17 61 IPR001005 -
Dod01g3258 464 PANTHER HOMEODOMAIN-RELATED 1 457 - -
Dod01g3258 464 Gene3D - 11 67 - -
Dod01g3258 464 PANTHER MYB DOMAIN PROTEIN 55 1 457 - -
Dod01g3258 464 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Dod01g3258 464 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dod01g3258 464 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dod01g3258 464 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dod01g3258 464 MobiDBLite consensus disorder prediction 118 198 - -
Dod01g3258 464 CDD SANT 69 109 IPR001005 -
Dod01g3258 464 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dod01g3258 464 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Dod01g3258 464 MobiDBLite consensus disorder prediction 129 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3258 Dod-Chr1 73627466 73629904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3258 1 464 MYB Transcription Factor Family AT1G09540 44.328 5.12e-111 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod01g3258 Myb_DNA-binding 3.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3258 K09422 - gmx:100788976 548.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3258 01 73627466 73629904 Dod01g3232 01 73303857 73306003 ECH
Dod01g3258 01 73627466 73629904 Dod01g3258 01 73627466 73629904 ECH