Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Dod01g3246 | ATGGCTGCCTCTTCTATCACAGGCATACACCAAACACCCTATCTGGCTCTCGAAATACACAACAAGAGGCCACCTTGTACCTCTTCTTCCCTTTCGTTACAATGTCTAGACAGCAAGTCCCACTTCAACAACGTCCTCAGAGCTCACCTTTCTACTAACATCGCCAACAACAAGAGCGGGTTTAAGCCCACTGTTAGTTTTGTCACTTCCGCCATTGCCACTCCGAATTCTTCCCTTCTCAGCGAAGAGGCCTTCAAGGGCATAGGCCGTGCCGACTTCCCCCAAAACGACGATGATGAATTCATCGCCTATGAGGACTCTGGCACCGACGACGGCTCTCCTGCTAACACTAACACTGAAGAACTCGACGTTTCCAAGCTGGGCCTTCCTTCTCGCCTTGTGGATTCGCTCCAGAAGCGTGGAATTACCCATCTTTTCCCCATTCAGAGAGCTGTTTTAGTACCTGCACTGGAAGGTAGAGATATCATTGCTCGTGCAAAGACCGGGACTGGCAAGACATTGGCGTTTGCGATTCCCATTATTAAAGGTCTCACTGAAGGTGAACACTCAAGTCCTCACAGGCGGTCTGGTCGTCTTCCTCGAGTGTTGGTCCTTGCACCTACCAGGGAGCTAGCAAGGCAAGTAGAGAAGGAGATAAAAGAGTCTGCGCCTTATCTGAGCACAGTTTGTGTTTATGGTGGTGTTTCTTATGTTACCCAGCAAAGTGCACTTTCACGCGGTGTTGATGTGGTTGTTGGAACACCTGGTAGAATAATTGACCTAATCAATGGGAACAGCCTTAAACTGAATGAAGTTCAGTACTTGGTCCTTGATGAAGCTGACCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAGTAATTTTGGAAAAGCTCCCATCGGAGAGGCAGAGCATGCTTTTTTCTGCAACCATGCCGGGTTGGGTGAAGAAATTGGCAAGAAAGTATTTGGACAATCCACTGACAATAGATTTGGTTGGTGAAGAAGAAGAAAAGCTTGCAGAAGGGATAAAACTTTATGCTATATCAGCCACAGCCACTTCAAAGCGGACAATTCTTTCTGATCTTATAACTGTTTATGCTAAGGGTGGGAAGACTATAGTTTTTACACAGACAAAAAGAGATGCTGATGAAGTATCACTGGCATTAACAAATAGTATAACTTCTGAAGCGCTGCATGGTGATATATCACAGCATCAAAGAGAGAGAACATTAAATGGTTTTCGGCAGGGCAAATTCACAGTGCTTGTTGCCACTGATGTTGCAGCTCGTGGACTTGATATTCCCAATGTTGATTTGATTATCCATTATGAGCTTCCCAATGATCCTGAGACTTTCGTACATCGCTCTGGTCGTACCGGCCGTGCAGGAAAAGAAGGTACTGCCATTCTTATGTACACCAGTAGCCAGAGGAGAACAGTTAGATCCTTGGAGCGTGATGTAGGCTGCAAATTTGAATTCATTAGTCCACCATCTATACAAGTAGTTTTGGAGTCTTCTGCTGCGCAAGTTGTTGCCGCACTCAATGGAGTTCATCCTGAGTCTGTTGCATTTTTCACACCAACTGCTCAAAAACTGATTGAAGAACAGGGAACAAGTGCCCTTGCAGCTGCACTAGCACAGATGAGTGGATTCTCTCGGCCTCCATCTTCACGGTCTCTAATCACCCATGAACAGGGATGGATTACGTTGCAGCTGATTCGAGATTCAGATAACAGAAGATATTTTTCTGCAAGATCAGTCACTGGGTTTCTTTCTGATGTTTATTCTCCAGCTGCTGATGAAGTTGGAAAAATACATTTAATTGCGGATGAAAGGGTTCAAGGAGCTGTTTTTGATCTTCCAGAGGACATTGCTAAAGAGTTGCTTAATAAGGAAATACCACCTGGAAACACACTTTCCACGATTACCAAGTTACCTCTTTTGCAAGATGATGGACCAGCAAGTGATTTCTATGGGAAGTTTTCTGATAGGGATCGAAGTAGTAGCCGAAGAGGAGGTTCTAGGGATCGGAGAGGTTTCAATACCTCACGGGGATGGGGTGCAGGCCGAGACTTTGATGATGAGTTCGGTGATTCATATAGCAGAGGTGGTAGAAGTAATAAAACTAGCAGCAGCTGGTCTCGAGCAGGAAAAATTAGTGGGGATGATTGGCCAATTGGAGGTAGACGATCAAGCAGGTCTTCATCATCAGGCAGAGGCTTTGGAGGGGCCTGTTTTAATTGTGGGGAATCTGGGCATAGAGCATCGGATTGTCCAAACAAGCGAGGCCTTTTTTAG | 2301 | 0.4572 | MAASSITGIHQTPYLALEIHNKRPPCTSSSLSLQCLDSKSHFNNVLRAHLSTNIANNKSGFKPTVSFVTSAIATPNSSLLSEEAFKGIGRADFPQNDDDEFIAYEDSGTDDGSPANTNTEELDVSKLGLPSRLVDSLQKRGITHLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFAIPIIKGLTEGEHSSPHRRSGRLPRVLVLAPTRELARQVEKEIKESAPYLSTVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLINGNSLKLNEVQYLVLDEADQMLAVGFEEDVEVILEKLPSERQSMLFSATMPGWVKKLARKYLDNPLTIDLVGEEEEKLAEGIKLYAISATATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTNSITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMYTSSQRRTVRSLERDVGCKFEFISPPSIQVVLESSAAQVVAALNGVHPESVAFFTPTAQKLIEEQGTSALAAALAQMSGFSRPPSSRSLITHEQGWITLQLIRDSDNRRYFSARSVTGFLSDVYSPAADEVGKIHLIADERVQGAVFDLPEDIAKELLNKEIPPGNTLSTITKLPLLQDDGPASDFYGKFSDRDRSSSRRGGSRDRRGFNTSRGWGAGRDFDDEFGDSYSRGGRSNKTSSSWSRAGKISGDDWPIGGRRSSRSSSSGRGFGGACFNCGESGHRASDCPNKRGLF* | 767 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Dod01g3246 | 766 | MobiDBLite | consensus disorder prediction | 658 | 685 | - | - | |
Dod01g3246 | 766 | PANTHER | ATP-DEPENDENT RNA HELICASE RHLE-RELATED | 65 | 755 | - | - | |
Dod01g3246 | 766 | Pfam | DEAD/DEAH box helicase | 146 | 319 | IPR011545 | GO:0003676|GO:0005524 | |
Dod01g3246 | 766 | CDD | GUCT_Hera | 558 | 637 | - | - | |
Dod01g3246 | 766 | CDD | SF2_C_DEAD | 344 | 473 | - | - | |
Dod01g3246 | 766 | SMART | c2hcfinal6 | 745 | 761 | IPR001878 | GO:0003676|GO:0008270 | |
Dod01g3246 | 766 | MobiDBLite | consensus disorder prediction | 747 | 766 | - | - | |
Dod01g3246 | 766 | Pfam | Helicase conserved C-terminal domain | 356 | 464 | IPR001650 | - | |
Dod01g3246 | 766 | MobiDBLite | consensus disorder prediction | 658 | 679 | - | - | |
Dod01g3246 | 766 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 153 | 330 | IPR014001 | - | |
Dod01g3246 | 766 | PANTHER | - | 65 | 755 | - | - | |
Dod01g3246 | 766 | MobiDBLite | consensus disorder prediction | 699 | 742 | - | - | |
Dod01g3246 | 766 | Gene3D | - | 347 | 537 | IPR027417 | - | |
Dod01g3246 | 766 | SUPERFAMILY | Retrovirus zinc finger-like domains | 732 | 764 | IPR036875 | GO:0003676|GO:0008270 | |
Dod01g3246 | 766 | Pfam | GUCT (NUC152) domain | 551 | 650 | IPR012562 | GO:0003723|GO:0004386|GO:0005524 | |
Dod01g3246 | 766 | Pfam | Zinc knuckle | 745 | 761 | IPR001878 | GO:0003676|GO:0008270 | |
Dod01g3246 | 766 | SMART | ultradead3 | 141 | 347 | IPR014001 | - | |
Dod01g3246 | 766 | CDD | DEADc | 133 | 331 | - | - | |
Dod01g3246 | 766 | Gene3D | - | 731 | 764 | - | - | |
Dod01g3246 | 766 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 359 | 504 | IPR001650 | - | |
Dod01g3246 | 766 | MobiDBLite | consensus disorder prediction | 703 | 718 | - | - | |
Dod01g3246 | 766 | ProSiteProfiles | Zinc finger CCHC-type profile. | 746 | 761 | IPR001878 | GO:0003676|GO:0008270 | |
Dod01g3246 | 766 | SMART | helicmild6 | 384 | 464 | IPR001650 | - | |
Dod01g3246 | 766 | Gene3D | - | 123 | 334 | IPR027417 | - | |
Dod01g3246 | 766 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 200 | 485 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Dod01g3246 | Dod-Chr1 | 73520079 | 73525140 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Dod01g3246 | 148 | 486 | Eukaryotic Initiation Factors Gene Family | AT1G72730 | 38.081 | 1.58e-64 | 219 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Dod01g3246 | - | - | gmx:100789516 | 1155.2 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Dod01g3246 | 01 | 73520079 | 73525140 | Dod06g1909 | 06 | 27972129 | 27980229 | ECH | |
Dod01g3246 | 01 | 73520079 | 73525140 | Dod01g3246 | 01 | 73520079 | 73525140 | ECH | |
Dod01g3246 | 01 | 73520079 | 73525140 | Dod06g1909 | 06 | 27972129 | 27980229 | PCT |