Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3246 ATGGCTGCCTCTTCTATCACAGGCATACACCAAACACCCTATCTGGCTCTCGAAATACACAACAAGAGGCCACCTTGTACCTCTTCTTCCCTTTCGTTACAATGTCTAGACAGCAAGTCCCACTTCAACAACGTCCTCAGAGCTCACCTTTCTACTAACATCGCCAACAACAAGAGCGGGTTTAAGCCCACTGTTAGTTTTGTCACTTCCGCCATTGCCACTCCGAATTCTTCCCTTCTCAGCGAAGAGGCCTTCAAGGGCATAGGCCGTGCCGACTTCCCCCAAAACGACGATGATGAATTCATCGCCTATGAGGACTCTGGCACCGACGACGGCTCTCCTGCTAACACTAACACTGAAGAACTCGACGTTTCCAAGCTGGGCCTTCCTTCTCGCCTTGTGGATTCGCTCCAGAAGCGTGGAATTACCCATCTTTTCCCCATTCAGAGAGCTGTTTTAGTACCTGCACTGGAAGGTAGAGATATCATTGCTCGTGCAAAGACCGGGACTGGCAAGACATTGGCGTTTGCGATTCCCATTATTAAAGGTCTCACTGAAGGTGAACACTCAAGTCCTCACAGGCGGTCTGGTCGTCTTCCTCGAGTGTTGGTCCTTGCACCTACCAGGGAGCTAGCAAGGCAAGTAGAGAAGGAGATAAAAGAGTCTGCGCCTTATCTGAGCACAGTTTGTGTTTATGGTGGTGTTTCTTATGTTACCCAGCAAAGTGCACTTTCACGCGGTGTTGATGTGGTTGTTGGAACACCTGGTAGAATAATTGACCTAATCAATGGGAACAGCCTTAAACTGAATGAAGTTCAGTACTTGGTCCTTGATGAAGCTGACCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAGTAATTTTGGAAAAGCTCCCATCGGAGAGGCAGAGCATGCTTTTTTCTGCAACCATGCCGGGTTGGGTGAAGAAATTGGCAAGAAAGTATTTGGACAATCCACTGACAATAGATTTGGTTGGTGAAGAAGAAGAAAAGCTTGCAGAAGGGATAAAACTTTATGCTATATCAGCCACAGCCACTTCAAAGCGGACAATTCTTTCTGATCTTATAACTGTTTATGCTAAGGGTGGGAAGACTATAGTTTTTACACAGACAAAAAGAGATGCTGATGAAGTATCACTGGCATTAACAAATAGTATAACTTCTGAAGCGCTGCATGGTGATATATCACAGCATCAAAGAGAGAGAACATTAAATGGTTTTCGGCAGGGCAAATTCACAGTGCTTGTTGCCACTGATGTTGCAGCTCGTGGACTTGATATTCCCAATGTTGATTTGATTATCCATTATGAGCTTCCCAATGATCCTGAGACTTTCGTACATCGCTCTGGTCGTACCGGCCGTGCAGGAAAAGAAGGTACTGCCATTCTTATGTACACCAGTAGCCAGAGGAGAACAGTTAGATCCTTGGAGCGTGATGTAGGCTGCAAATTTGAATTCATTAGTCCACCATCTATACAAGTAGTTTTGGAGTCTTCTGCTGCGCAAGTTGTTGCCGCACTCAATGGAGTTCATCCTGAGTCTGTTGCATTTTTCACACCAACTGCTCAAAAACTGATTGAAGAACAGGGAACAAGTGCCCTTGCAGCTGCACTAGCACAGATGAGTGGATTCTCTCGGCCTCCATCTTCACGGTCTCTAATCACCCATGAACAGGGATGGATTACGTTGCAGCTGATTCGAGATTCAGATAACAGAAGATATTTTTCTGCAAGATCAGTCACTGGGTTTCTTTCTGATGTTTATTCTCCAGCTGCTGATGAAGTTGGAAAAATACATTTAATTGCGGATGAAAGGGTTCAAGGAGCTGTTTTTGATCTTCCAGAGGACATTGCTAAAGAGTTGCTTAATAAGGAAATACCACCTGGAAACACACTTTCCACGATTACCAAGTTACCTCTTTTGCAAGATGATGGACCAGCAAGTGATTTCTATGGGAAGTTTTCTGATAGGGATCGAAGTAGTAGCCGAAGAGGAGGTTCTAGGGATCGGAGAGGTTTCAATACCTCACGGGGATGGGGTGCAGGCCGAGACTTTGATGATGAGTTCGGTGATTCATATAGCAGAGGTGGTAGAAGTAATAAAACTAGCAGCAGCTGGTCTCGAGCAGGAAAAATTAGTGGGGATGATTGGCCAATTGGAGGTAGACGATCAAGCAGGTCTTCATCATCAGGCAGAGGCTTTGGAGGGGCCTGTTTTAATTGTGGGGAATCTGGGCATAGAGCATCGGATTGTCCAAACAAGCGAGGCCTTTTTTAG 2301 0.4572 MAASSITGIHQTPYLALEIHNKRPPCTSSSLSLQCLDSKSHFNNVLRAHLSTNIANNKSGFKPTVSFVTSAIATPNSSLLSEEAFKGIGRADFPQNDDDEFIAYEDSGTDDGSPANTNTEELDVSKLGLPSRLVDSLQKRGITHLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFAIPIIKGLTEGEHSSPHRRSGRLPRVLVLAPTRELARQVEKEIKESAPYLSTVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLINGNSLKLNEVQYLVLDEADQMLAVGFEEDVEVILEKLPSERQSMLFSATMPGWVKKLARKYLDNPLTIDLVGEEEEKLAEGIKLYAISATATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTNSITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMYTSSQRRTVRSLERDVGCKFEFISPPSIQVVLESSAAQVVAALNGVHPESVAFFTPTAQKLIEEQGTSALAAALAQMSGFSRPPSSRSLITHEQGWITLQLIRDSDNRRYFSARSVTGFLSDVYSPAADEVGKIHLIADERVQGAVFDLPEDIAKELLNKEIPPGNTLSTITKLPLLQDDGPASDFYGKFSDRDRSSSRRGGSRDRRGFNTSRGWGAGRDFDDEFGDSYSRGGRSNKTSSSWSRAGKISGDDWPIGGRRSSRSSSSGRGFGGACFNCGESGHRASDCPNKRGLF* 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3246 766 MobiDBLite consensus disorder prediction 658 685 - -
Dod01g3246 766 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 65 755 - -
Dod01g3246 766 Pfam DEAD/DEAH box helicase 146 319 IPR011545 GO:0003676|GO:0005524
Dod01g3246 766 CDD GUCT_Hera 558 637 - -
Dod01g3246 766 CDD SF2_C_DEAD 344 473 - -
Dod01g3246 766 SMART c2hcfinal6 745 761 IPR001878 GO:0003676|GO:0008270
Dod01g3246 766 MobiDBLite consensus disorder prediction 747 766 - -
Dod01g3246 766 Pfam Helicase conserved C-terminal domain 356 464 IPR001650 -
Dod01g3246 766 MobiDBLite consensus disorder prediction 658 679 - -
Dod01g3246 766 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 153 330 IPR014001 -
Dod01g3246 766 PANTHER - 65 755 - -
Dod01g3246 766 MobiDBLite consensus disorder prediction 699 742 - -
Dod01g3246 766 Gene3D - 347 537 IPR027417 -
Dod01g3246 766 SUPERFAMILY Retrovirus zinc finger-like domains 732 764 IPR036875 GO:0003676|GO:0008270
Dod01g3246 766 Pfam GUCT (NUC152) domain 551 650 IPR012562 GO:0003723|GO:0004386|GO:0005524
Dod01g3246 766 Pfam Zinc knuckle 745 761 IPR001878 GO:0003676|GO:0008270
Dod01g3246 766 SMART ultradead3 141 347 IPR014001 -
Dod01g3246 766 CDD DEADc 133 331 - -
Dod01g3246 766 Gene3D - 731 764 - -
Dod01g3246 766 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 359 504 IPR001650 -
Dod01g3246 766 MobiDBLite consensus disorder prediction 703 718 - -
Dod01g3246 766 ProSiteProfiles Zinc finger CCHC-type profile. 746 761 IPR001878 GO:0003676|GO:0008270
Dod01g3246 766 SMART helicmild6 384 464 IPR001650 -
Dod01g3246 766 Gene3D - 123 334 IPR027417 -
Dod01g3246 766 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 485 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3246 Dod-Chr1 73520079 73525140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3246 148 486 Eukaryotic Initiation Factors Gene Family AT1G72730 38.081 1.58e-64 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3246 - - gmx:100789516 1155.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3246 01 73520079 73525140 Dod06g1909 06 27972129 27980229 ECH
Dod01g3246 01 73520079 73525140 Dod01g3246 01 73520079 73525140 ECH
Dod01g3246 01 73520079 73525140 Dod06g1909 06 27972129 27980229 PCT