Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3232 ATGGGGAGGCACTCTTGCTGTTACAAGCAGAAGCTTAGGAAGGGTCTCTGGTCACCTGAGGAGGATGAAAAACTTCTCAGGCATATCACTAAGCATGGTCATGGATGCTGGAGTTCTGTTCCTAAGCAAGCAGGTTTGCAGAGGTGTGGTAAGAGCTGCAGGCTTAGATGGATCAATTATTTAAGGCCTGATTTAAAGAGAGGTACATTTTCTCAAGAAGAAGAAAATATTATCATTGAACTTCATGCAGTGCTAGGGAATAGATGGTCTCAAATTGCGGCACAACTACCAGGGAGGACTGACAATGAAATAAAGAACCTGTGGAATTCATGCCTAAAGAAGAAGCTGAGGCAAAGAGGTATAGACCCAGTTACACATAAGCCACTGTCTGAGGTTGAGAATGGAGAGGACAAAGCAAGGAGCCAAGAGAAAGCACCAGAAGTATCCAATGAATTGAACCTTCTTAAATCAGAGAGCTCCAAGTCTGATGCTGCTTCCTATGAGCACATACCATCTTCAATTTCCCCAAAAGTATGTGCAACTGAGATGGAAGAAGGCTCTTCAAGCAACAAAAACAACACCAACTTGATAACCAATTGTTCTTCCAGCAAAGGCTTGTTCGCTGACAGGTTCATGGCTTCACACCATGATAGCTACACCACCACCAATTGCCAACCCTCAGATTTGATGGGGAATTACTCCCTTCAGATGAGTTATGCATCATCCACTGACACCCTCCCAACAACTAATTCAAACTCTTGCCATTGGTTCACACAAACTGAAAGGCCTTTTGATATGAACTCAGAATTCAACAATTCCAATGTCATGTCCATTCTCCCACCTTCAACCACCTCATTCCCACCTGGCTCCTTTTGCTATAAGCCATCTCTTCCTGTCCCCTCAGAAGATCTCTCCACAGCCTCATTCACTGTGAATGGATCCCATTACTGGGAAGCCAGTGCCCCCAACAGCAGCAATTGCAGCAATAGAAGTAATGGTAATAGCCCCTTAAATGTGAAGAACAACAGCACCGTCCTTTCTTCATGGGGAATGACAGATTGCAGTGCCTCTCCTAAAGAGGCTCAAGTTCATCTGATGGAAAGCCAGAGTGAAGAGGCCAAGTGGTCTGAGTACCTTCACAATCCAATGTTAATGCTGGTACAAAATCAAGCTTCTGATCAATCTTTATGCAACATGATAAAGCCTTCCACTCATTTGGTTCCTGATACTTTGGGGGCTATGTTGCCTCATTCCAAGCATCAAGAACAGTCCCAAAGTTCTAGCATCTTTTCCAAAGACATCCAGAAGCTAACAGCAGCCTTTGGACATGTATAA 1335 0.4412 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKHGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENIIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSEVENGEDKARSQEKAPEVSNELNLLKSESSKSDAASYEHIPSSISPKVCATEMEEGSSSNKNNTNLITNCSSSKGLFADRFMASHHDSYTTTNCQPSDLMGNYSLQMSYASSTDTLPTTNSNSCHWFTQTERPFDMNSEFNNSNVMSILPPSTTSFPPGSFCYKPSLPVPSEDLSTASFTVNGSHYWEASAPNSSNCSNRSNGNSPLNVKNNSTVLSSWGMTDCSASPKEAQVHLMESQSEEAKWSEYLHNPMLMLVQNQASDQSLCNMIKPSTHLVPDTLGAMLPHSKHQEQSQSSSIFSKDIQKLTAAFGHV* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3232 444 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Dod01g3232 444 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dod01g3232 444 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dod01g3232 444 MobiDBLite consensus disorder prediction 122 169 - -
Dod01g3232 444 Gene3D - 69 146 - -
Dod01g3232 444 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Dod01g3232 444 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dod01g3232 444 CDD SANT 17 61 IPR001005 -
Dod01g3232 444 MobiDBLite consensus disorder prediction 122 145 - -
Dod01g3232 444 PANTHER MYB DOMAIN PROTEIN 55 1 438 - -
Dod01g3232 444 MobiDBLite consensus disorder prediction 146 169 - -
Dod01g3232 444 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dod01g3232 444 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dod01g3232 444 SMART sant 13 63 IPR001005 -
Dod01g3232 444 SMART sant 66 114 IPR001005 -
Dod01g3232 444 PANTHER HOMEODOMAIN-RELATED 1 438 - -
Dod01g3232 444 Gene3D - 11 67 - -
Dod01g3232 444 CDD SANT 69 109 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3232 Dod-Chr1 73303857 73306003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3232 1 443 MYB Transcription Factor Family AT1G09540 41.575 6.60e-94 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod01g3232 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3232 K09422 - gmx:100815881 572.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3258 01 73627466 73629904 Dod01g3232 01 73303857 73306003 ECH
Dod06g1925 06 28266713 28267507 Dod01g3232 01 73303857 73306003 ECH
Dod01g3232 01 73303857 73306003 Dod01g3232 01 73303857 73306003 ECH
Dod01g3232 01 73303857 73306003 Dod06g1925 06 28266713 28267507 PCT